Onig048067.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- TIGD6
- Assembly
- GCA_963942545.1
- Location
- OZ012663.1:85187230-85188226[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-08 1.6e-05 26.1 0.0 2 43 16 57 15 59 0.90
Sequence Information
- Coding Sequence
- atgCCCAGAAATCGTCCAAGGAGCACCGCTAAAGCGGCTTGGAGCGAAGAAGACCTAGTCAACGCTAAGACTGCTATTGAAAGAGGGATGTCAAAAAGGAAAGCAGCAAAAACACATAACATTCCGTTTATCACATTAAGAGACagacttaaaaatgaaaatatgagcAGTCCACGACTAGGACGGTCGTTATATTACGGGCTGACTGTAGCAGATCTACGCAAATGTGTTTACAAGTACTTTGAggttaataatataaaaaacaattttgaaacaaGCAGCACAACGGCAGGAATGGACTGGGTGCAGGGTTTCATGAGACGCAACCCTTCTGTAACTGTTCGCAAAGCTGAAGCAACAAGCTTGAATAGGGTTTCTGCATTTAATAAAGAAGAAATAACTCGCTTCTACAATATGCTTGGTGTTGTCATGGAGAAACATGAGTTCACTCCCAATAACATCTATAATGCTGACGAGACAGGTGTTACAACCATAACAGACCCAGGTAAAGTGCTTGCAGAGAAAGGCCAACGAAGAGTGGGAGCAGTGACAAGCGGCGAACGAGGCAGGAACATAACAAATATGTGTACAAGGAGTGCGGCTGGAAACTTTATACCACTTATGTTCATCTTTCCCAGACAGAGAATGACACCATTATTGGAAAAGGATGGACCATTTGGTGCTCTCTACGCCAACTCAAAGAATGGCTGGATAAACGAAGATATATTTGTCGAGTGGCTTAAACATTTTGTAGCATATGGCAAACCTACACAAGAATCTCCTGTGCTTTTAATACTCGATAACCATAGCAGTCACATTTCGCTTTCAGCTTTCAActattgcaaagaaaatcatATTGTCATGCTTACGATTCCACCACACAGCTCTCACAGAACTCAACCTCTTGATGTGGCTTTCTTTGGACCCCTAAAGGCTACCTAA
- Protein Sequence
- MPRNRPRSTAKAAWSEEDLVNAKTAIERGMSKRKAAKTHNIPFITLRDRLKNENMSSPRLGRSLYYGLTVADLRKCVYKYFEVNNIKNNFETSSTTAGMDWVQGFMRRNPSVTVRKAEATSLNRVSAFNKEEITRFYNMLGVVMEKHEFTPNNIYNADETGVTTITDPGKVLAEKGQRRVGAVTSGERGRNITNMCTRSAAGNFIPLMFIFPRQRMTPLLEKDGPFGALYANSKNGWINEDIFVEWLKHFVAYGKPTQESPVLLILDNHSSHISLSAFNYCKENHIVMLTIPPHSSHRTQPLDVAFFGPLKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -