Onig035012.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012662.1:51865576-51867994[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-08 2e-05 25.8 0.0 1 37 42 78 42 84 0.94 2 2 2.6 1.2e+03 0.9 0.0 3 21 536 556 535 556 0.83
Sequence Information
- Coding Sequence
- ATGGTGAAGCGGCCTGTTACTCCCAGCACCTCTGGATGCAAGACAAAGAAGAAACTCAAAATGGCACCGAAGAAATCTCATACCGTGCAAAAACGATTAACGGCAGAAAATAAGGCTTCATACACCGAGGAAACCATGACAGAAGCGCTAAAATTGATAAGAGAGGGCTCTATAACTAAAAAGGGTGCAAGCAAGCAATTTAACATTCCAAGACAGACCCTCCAGTACCGACTCGGGGCGAACTTCAAGAAACTAAGGACAGGTCCATCAACAGTACTCACGGAGGAAGAAGAAAACCTCTTGGTTAAATGGCTGATCGATTGTGGCAAAAAAGGGTTTCCCAAACGCCAGCTGGATTTACTTTCCagcgtaaaaaaattcttggaacaAACCCCAACCAGAGtgacaccatttactgataacAAGCCTGGACCTTCGTGGATGTCCTCTTTCATGAAGAGGCACCCAGAATTATCTTTCCGGACTCCAGAAGCTGTAACAGCTGCCAGCGCTAATGTGTCATCAGCTGACCTTCAAAAATGGTTCTTAGATATTGAGTCTTATCTCACGGAAAACAACTTGATGGACGCCCTACAGGACCCTTCAAGGGTATTCAACGGGGACGAGACCAATTTTCAACTGTGTCCCACAAATGGGAACGTTTTAACTTTGAAAGGTTCACAGAATGTGTATGAGGTTGATTGCGCTAACAGTAAATCCACACTAACAGCTATGTTTACATTTTCTGCCGCTGGAAATATGGTCCCTCCAATGATCATTTACCCTTACGTAAGGATTCCACAGGAAATCACCAGGGAGGTTCTTGAAGGATGGGGTGTTGGCCGCAGCGAATCAGGCTGGATGACATCCGAAACATTTTATAAGtacgtttcaaaaatatttatcccATTCCTGCAGGAAAATGTAATCACGACTCCCGTTATCTTATTCGTCGACGGACATAAAAGCCACTTAAGCTACCACGTGAGTGAATTGTGCTCCCAGGCAAATATGGTATTAATCGCACTGTACCCCAATGCCACCAGAATACTTCAACCGGCAGATGTTGCTGCTTTTAGACCTCTAAAACAAGCGTGGAGAAATGAAATTGCGAAATGGAGGATTGAAAGCCCTGGAGTACCGGTCACAAAGGATAAAGTTGCTCCTTTGTTGGCAACAGCCCTGCAGTACTTGAATCCTGAGATGCTAAAAAATGGGTTTCAAGCTACTGGCCTCTTTCCTTGGAATTTCCACGCCATTAACTTCACGAAATGTTTGGGAAGCTCCACGGTTATCCCAGCACCTTTACCGCCAAAACTTGACTTTACTCAATTTCAAAAACTCGCTGGTGAAACACTGATGGGTGAACTGGAGAGTGGCGCAGTCAGCCACCGGCCGAGCCAATATGAAATTCTTTgcagaaaaatatattcttttttcaattCGGTAAAAGATCCCATCCTGATTCGTAAAGTATTCAACAGCAGTGAACTGCACGAGGAGTTGTCAATGATAGAAGGAGGATTAAGTGGAAATGAACCAGTCACACATCAAGCTACCAGCACCCACCCTTTTGAGCTCACAGTGCTCGAACCCGTTGCTGGGACGAGTTTTCAGGAAGCCACAGCACATATTTTGAATGGACGATATGCCATGGGTACTCATCAAgaagttttcgaaaatgatCCAAACTTCATCCCAGAGAAAGCTGTTGAGAATCGATCTAGCATATCAGCTCATTCTACCTGCAAAACTGACTGCATCTCGAAGGAACTGAGTGCATATGGTTTTCCCCCGACCGAACTCCTAGATTGGCCAAGGAGTCCAAAACGGAAAGGCTCTAGGAACACAGAGAGAGTTCCATTCGTTCTCACGAGCAAGGAATATAAACAGATTCACCTGGACAAGGAagcgaagaagaaaaagaaagagGAGTTAAAAGACCAGAGAAAGAAGGACAGGGAAGAGAAAAAAGCGAGAAATGAGAacatcaaaaaaggaagaaaagctAAACTGAAAACTTTCCCTGCGCAGAACAAAGAAAATGATACTCGTAAATTATCCGGGAACTTGTGCTTTTTATGTGCTGGTTTTCTGAAAAACCATCCTACCATTGCATGCACGACTTGCAGTAAAGTTTTTCATAAAGCATGCTGTGAGTCACAGCAAAGTTTTGATGAGGAAATTGCTGACAAGGACGTTTATTTCTGTCCATCATGTCGTCATGACGCACCAGACTTGTTCTAG
- Protein Sequence
- MVKRPVTPSTSGCKTKKKLKMAPKKSHTVQKRLTAENKASYTEETMTEALKLIREGSITKKGASKQFNIPRQTLQYRLGANFKKLRTGPSTVLTEEEENLLVKWLIDCGKKGFPKRQLDLLSSVKKFLEQTPTRVTPFTDNKPGPSWMSSFMKRHPELSFRTPEAVTAASANVSSADLQKWFLDIESYLTENNLMDALQDPSRVFNGDETNFQLCPTNGNVLTLKGSQNVYEVDCANSKSTLTAMFTFSAAGNMVPPMIIYPYVRIPQEITREVLEGWGVGRSESGWMTSETFYKYVSKIFIPFLQENVITTPVILFVDGHKSHLSYHVSELCSQANMVLIALYPNATRILQPADVAAFRPLKQAWRNEIAKWRIESPGVPVTKDKVAPLLATALQYLNPEMLKNGFQATGLFPWNFHAINFTKCLGSSTVIPAPLPPKLDFTQFQKLAGETLMGELESGAVSHRPSQYEILCRKIYSFFNSVKDPILIRKVFNSSELHEELSMIEGGLSGNEPVTHQATSTHPFELTVLEPVAGTSFQEATAHILNGRYAMGTHQEVFENDPNFIPEKAVENRSSISAHSTCKTDCISKELSAYGFPPTELLDWPRSPKRKGSRNTERVPFVLTSKEYKQIHLDKEAKKKKKEELKDQRKKDREEKKARNENIKKGRKAKLKTFPAQNKENDTRKLSGNLCFLCAGFLKNHPTIACTTCSKVFHKACCESQQSFDEEIADKDVYFCPSCRHDAPDLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127311;
- 90% Identity
- -
- 80% Identity
- -