Onig028495.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012661.1:77941829-77942506[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-11 2.2e-08 35.2 0.0 4 37 32 65 29 67 0.94
Sequence Information
- Coding Sequence
- ATGTAttcatcttcatttttttctggttCCAGTCATGCCTCGAGCTCAATTGTCACCAAAGCCAGACGCGAAAGAAAACAATGGACCAGCAATAATATGATTGAAGCTGTAAAAGCAGTAAGAGAAAAGAAAATGGGTTTGAAAAAAGCGTTTAAACTTTataatgtcccaaaaactactATGCAAAGGTTTGTGCACAGTGACCAGCCTCCCGATGAAGTTGTAAAAACTACTATAGGAAGAAAACCTGCCCTGCCATCTCATCTTGAAGAAAGCCTTGTGTTATACCTTCTCACTATGGAAAGCAAATTCTATGGCTTGACCCGTCAAGATGTTCGGAAAATGGCCTATCAGTTggcttcaaaaaataatatcgaaCATCCGTTTAGAGATAACATAGCAGGTCGAGCTTGGCTTGATCATTTCTTATTACGCCACAAAGATAAACTTTCCATTCGATCACCAACAGGAACTTCGAATGCTCGGGCTCAAGGTTTCAATAAAGAAGCAGTGGACAAGTTCTTTGATATTCTTGAAgaatatttccaaaaacataattttcctcCAGAGAGAATTTTTAAAACCGGGCTATCTATCGTACAGAGTAAAGTGGTTAAACTGATTGGTATGCGAGGGAAAAGACAAGTAGATAGCATAACTGCGGCTGAACGTGGATGA
- Protein Sequence
- MYSSSFFSGSSHASSSIVTKARRERKQWTSNNMIEAVKAVREKKMGLKKAFKLYNVPKTTMQRFVHSDQPPDEVVKTTIGRKPALPSHLEESLVLYLLTMESKFYGLTRQDVRKMAYQLASKNNIEHPFRDNIAGRAWLDHFLLRHKDKLSIRSPTGTSNARAQGFNKEAVDKFFDILEEYFQKHNFPPERIFKTGLSIVQSKVVKLIGMRGKRQVDSITAAERG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127262;
- 90% Identity
- iTF_01127258;
- 80% Identity
- -