Onig018410.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:83945613-83947394[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 6.2e-08 33.8 0.0 3 38 17 52 16 56 0.92 2 2 4.3 2e+03 0.1 0.0 15 26 371 381 361 382 0.71
Sequence Information
- Coding Sequence
- ATGCCACGTAATTATGAAAGAAAGACAGCAAGACAAGACTGGaacgttgaaaaaatgaaagcagCTATTCTCAGCGTCTTTGATGGTTCTATGGGCTATCTAAAAGCAGCAGAAACGTACGGAGTGCCGAAATCAACGTTACAAGATCGTGTACGAAAATATAGAGAGTGTAACAATATTACAGTTGCTACAAGCAAAGGACTTGGGCGTTTCCGTCCAGTATTTTCTGAGCAGCAAGAGCAAAATCTAGTAGGCCATATCCTACTTTTGGAAAGTCGTTTATTTGGTCTAACGTATAAGGACATTCGACGGTTGGCATTTGAGCTGGCAGAGGGCAATAATATTCCTCATAGTTTCAACAAATTACTAGGCTTGGCAGGCGAAGATTGGTTAGCTGGCTTTCTAAAACGCCATCCGAAGTTATCTCTTCGTGCAGCTGAACCTACATCTATCGCCCGAGCTATGGGTTTCAACAGAGTaagtgtaaataatttttttgatttgttggaACAAATTATTGACCAATATAAGCTTCCACCTGGAAAACTTTTCAACGTTGATGAAACTGGTATCACCACGGTATCGAAGAAGCAAAGTCGCATAGTTGCcttaaaaggaaaaaaacaagTGGGATTATTAACTTCAGCGGAGAGAGGCCAACTTGTTACGGCGGTTATTTCTGTTTCTGCTACAGGAAACTATATTTTTCCTTTGCTTATTTTTCCGCGAGTTAGAATGAAAGTGGAATTACTGAATGGCGCACCACCGGGAACTATAGCTGTTTGCCATTCAAGCGGGTGGATTCAAGGCAACATATTTGTTCAATGGTTGACGCATTTTATTGCACATGTTAAGTCCAACAAAAATGATCCTGTTTTAATAGTGCTTGACGGTCATTCAACTCACACCAAAAACCTTGCTCTTCTTGAAAAGGCAAGggaaaatggaataattatattgAGTTTACCTCCGCACTGCACTCACCGATTGCAGCCTTTAGATGTTAGCTTCATGGGCCCCCTCAGTACATTTTATTCGCAAAACATCAACATTTGGCTTCGAAATCATCCTGGGCGGGTGGTTACGCAATACCAGGTAGCAGAACTTTTTGGTATTTCATATTGCAAAGCAGCAACAGTTCATAACGCGATTTCCGGATTTTCTAAAACTGGTATATTACCTACAAATAGATTTAAATTTGATGAAGCTGATTTTGCAGCTGCAGAAACGACCAATATACAAACAGATACAAAACtaacatcaaattttgtacCCTTAATATCCGCCGACGCTCAGCAGGTCGCAGTATCAGCTTCTTTTGGTGCTAATAATATGCCAACAACTTCTGCAGCGTATTTTCAATCTGAACTACCTAACGAACAACATGGTCCATACTCTTCTAAAACACTGTTTTTATCTCCAGCTGATATCATGCCTGttccgaaaataaatattagtcaGAAACGGAGTTCTAATCGCCGTAGAGGCAAAACTGCAGTCATAACTTCTCCTGAGTTCGAATCAGAACTTAAAAGGAGCATCCTAGTAAAGGAAACGAAACCTCCGAAGGAGAAAATAAATGCAGCATCGAATGGTACATCTTCAACAGTCACGCAAGATACTGGAAACAAAAATCTATGTCTATACTGTTGCCAAAGGTATGGTGAAAATCGGTTAAATGATGGGTGGGTGCAATGCTTAAGCTGCAGTCGATGGGCTCATGAGAGCTGCACTGGATGGAAACCTGAGGATCTAGACGATTTCTATTGTAAAcgttgttga
- Protein Sequence
- MPRNYERKTARQDWNVEKMKAAILSVFDGSMGYLKAAETYGVPKSTLQDRVRKYRECNNITVATSKGLGRFRPVFSEQQEQNLVGHILLLESRLFGLTYKDIRRLAFELAEGNNIPHSFNKLLGLAGEDWLAGFLKRHPKLSLRAAEPTSIARAMGFNRVSVNNFFDLLEQIIDQYKLPPGKLFNVDETGITTVSKKQSRIVALKGKKQVGLLTSAERGQLVTAVISVSATGNYIFPLLIFPRVRMKVELLNGAPPGTIAVCHSSGWIQGNIFVQWLTHFIAHVKSNKNDPVLIVLDGHSTHTKNLALLEKARENGIIILSLPPHCTHRLQPLDVSFMGPLSTFYSQNINIWLRNHPGRVVTQYQVAELFGISYCKAATVHNAISGFSKTGILPTNRFKFDEADFAAAETTNIQTDTKLTSNFVPLISADAQQVAVSASFGANNMPTTSAAYFQSELPNEQHGPYSSKTLFLSPADIMPVPKINISQKRSSNRRRGKTAVITSPEFESELKRSILVKETKPPKEKINAASNGTSSTVTQDTGNKNLCLYCCQRYGENRLNDGWVQCLSCSRWAHESCTGWKPEDLDDFYCKRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127255;
- 90% Identity
- iTF_01127255;
- 80% Identity
- -