Opun024118.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638140.1:96476111-96480970[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00054 0.089 15.1 0.8 3 23 240 261 239 261 0.92 2 12 0.0065 1.1 11.7 0.4 1 23 360 382 360 382 0.95 3 12 0.00046 0.074 15.3 1.6 1 19 386 404 386 407 0.95 4 12 5.9e-05 0.0095 18.1 0.7 2 23 412 434 411 434 0.96 5 12 0.011 1.8 11.0 1.8 1 21 438 459 438 460 0.92 6 12 1.4e-06 0.00023 23.2 3.1 1 23 466 488 466 488 0.98 7 12 0.00082 0.13 14.5 2.6 3 23 500 520 498 520 0.96 8 12 0.00041 0.067 15.5 2.3 1 23 525 547 525 547 0.98 9 12 0.0031 0.5 12.7 0.7 3 23 555 575 554 575 0.98 10 12 1.8e-05 0.0029 19.7 1.6 1 23 581 604 581 604 0.98 11 12 0.11 17 7.9 0.3 2 23 607 628 606 628 0.93 12 12 0.0055 0.89 11.9 2.8 1 23 633 656 633 656 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTATCGAAGCAGAAACAGACGATCCTCTCGAGAGACTATGCGGCATATGTGGCGAACCCCACGAATGCTCCTCCTGCACGGTTGTTAAGATGAAGGCCCACATTAAGGATAATCCGGTGCTGTCCAGGGCTCGGCTATCACTTCCCGGCACTTTAAAAATTGAGACCATGTCCGACGGGTCCTTCAACATACTGTCGTCGGAAAACGTAGACGAGGGCACCCGATACGGGCCTTTCGAAGCGAAGAAATTATTCAGCCTCGATCCCTGCATAAATTTcccgttgaaaatttttaaagcCAAAGACTACTTCCAAGAGTATTACTTGGATACGTCCAACGAAAATGAGTGCAACTGGATGTTTTTCGTGCAACCGGCAAGCACCTTGGAAGAGCAAAATCTGATTTGCTATGAAGATAATTGCAACGTTTAttacatttcaactcggcaaatattATCTGGCGAGCATTTTAAAGTGTGGTATTCTCCCTATTATTGCAAAATGATGGATAAAAATGCACTTGTTGGCCCGCAGATAGCTCAAGGGAATGacgaaatttcagaaaatgacataaatgaaatattgaagaaaCAACATAATATTCGAGAGAGGAAAGTCTGGATTTGCAAGTTTTGCGGAAAGCAGGAAGATGGAGTTCTTAATTTTGCCCTCCATATTCTTGAACATTACCAAATGCAATTGCGTAAAATCTGCGAGGTATGCAAAGAGAGTTTTCAGACAAGAAAAAGTCTGAAAAAGCACATATTTCTAGTCCATTCAAATGATTTGTACGCAAACAACATTGCATTAGAAAAACCTATGGCGAAAAACGTTGCCGACGAACAAATTGGTAACCAGAACAAGCAGGAGCTTGGAGGCCCATTGCTAAATGAAATGCTCTCGGAAACACTGGACAACACGAACATACTTTTAGAGCATATGATGTTGTCGAACTTTGACATGGACCAAACGAATGTAATGTTGGAAAATGATAATTTAAGCCTGGGAGTGGAAAACTTATTGAACGAAACGGAAGACTTTAATTTCAACATCGAAGAGACAAACGAAAAATTTGTATGTGatatatgtttgaaaaattttacGAAGCTCAAGTTTTTGGTTACCCATTTAGCGGCCCATACTGGGAAATATACTTGCAGCACCTGTTCAACGGTATTTTCTCGAAACGAGAACTTGATCTCACATAGTTGTAACGGGACTGGAATAAAATGTGATTACTGTGATCAAAGTTTtgcgttaaaaaaatatctaacgAGACATGTCGCAACAAAGCACAGTACTGAATTCGTGTGTACCGACCAATGCAAAAAAGTGTTCACTTCCAGCAAAACTCTGGACGAACATAAGTGCGTACCTGAGAAAGTAATATTTACGTGTAATGTATGCCAAAAAGAATTTTACAAGAGCAGAAATTTGAAGAGGCACATGAAAGTGCACAATGGCGCAAAGAACCGGAACAGTGTTCACTTGTGTGAAATATGTTCCAAGCAATACCAGACTAAAAAAATGCTCACTCAACATATGGCTACGCACAAAGAGGGACAATTTTCTTGTAACGTGTGCCCAAAGAAATTTTTACGTAAgacatattttaaggaacacatgCAGATTCATAAGAAAGTTatgCTGCACGGCTGTAAATTTTGTGATCAGAAATTcgcgttaaaaaaatatttagcaaCTCACATGACGATCCACGAcgaagattttaaatttaagtgcCCCGAATGCCCGTCCAAGTTCAAACAGAAAACGAACATGCAAACGCACATTAACCGTATGCACAACAAAAAGTGCGCCAACTGTGATGAGGTGTTCAAAAGTGTGGAAATTCTGAAACAGCACAGAGCTTTGCATTACGAAAAGTGTTACGAGTGTCCTGTGTGCAAGCACATTGTTAAATTAAAGAGTTCATTTACGAGACATTGGAAGAAGAAGCACCCTGAGGAGCATTTTGATTTTACCCTAATTAAACGTGTcgaaagaaaaattaacaacgaaaatatgaataataataatgaaaacgtTGATAATTCTGACATTTTACCAGAGAAGAATAAGGATAGTGACAACTGCGATGACATAGAggatttattaaatatgaaagaaaaaGATTACTCGGATTCTATACAGGATATCGATAGTAACTTGGATTACATCGTTAATAACTACGATCCGAACAATTTATTAGATCCTAATTTCAATGTCAACGAAACTATGAGGAATGACAACAAGATGATCGATGATGCCGTGTTAGATTTTAATAGTTTAGAAATGGAATTCGAGAAGAACTTTAATGTGCAAGAAAACGTAGACTTGGACAATCAAGAGGTTTGCTTGTCCATGCCTGATTTAAGTGATATTGAACAAAAAATTACCCTCGGGGAAAATGCATATATCCTGGAAAATGGGACAATAATTGAACCCATTGAGCAAGGGAAAGTCTTACTGTATATCTtagaaaatggacaaaaagcGTAG
- Protein Sequence
- METIEAETDDPLERLCGICGEPHECSSCTVVKMKAHIKDNPVLSRARLSLPGTLKIETMSDGSFNILSSENVDEGTRYGPFEAKKLFSLDPCINFPLKIFKAKDYFQEYYLDTSNENECNWMFFVQPASTLEEQNLICYEDNCNVYYISTRQILSGEHFKVWYSPYYCKMMDKNALVGPQIAQGNDEISENDINEILKKQHNIRERKVWICKFCGKQEDGVLNFALHILEHYQMQLRKICEVCKESFQTRKSLKKHIFLVHSNDLYANNIALEKPMAKNVADEQIGNQNKQELGGPLLNEMLSETLDNTNILLEHMMLSNFDMDQTNVMLENDNLSLGVENLLNETEDFNFNIEETNEKFVCDICLKNFTKLKFLVTHLAAHTGKYTCSTCSTVFSRNENLISHSCNGTGIKCDYCDQSFALKKYLTRHVATKHSTEFVCTDQCKKVFTSSKTLDEHKCVPEKVIFTCNVCQKEFYKSRNLKRHMKVHNGAKNRNSVHLCEICSKQYQTKKMLTQHMATHKEGQFSCNVCPKKFLRKTYFKEHMQIHKKVMLHGCKFCDQKFALKKYLATHMTIHDEDFKFKCPECPSKFKQKTNMQTHINRMHNKKCANCDEVFKSVEILKQHRALHYEKCYECPVCKHIVKLKSSFTRHWKKKHPEEHFDFTLIKRVERKINNENMNNNNENVDNSDILPEKNKDSDNCDDIEDLLNMKEKDYSDSIQDIDSNLDYIVNNYDPNNLLDPNFNVNETMRNDNKMIDDAVLDFNSLEMEFEKNFNVQENVDLDNQEVCLSMPDLSDIEQKITLGENAYILENGTIIEPIEQGKVLLYILENGQKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -