Opun008733.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638138.1:128756820-128759862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0013 0.21 13.9 0.5 2 23 8 29 7 29 0.96 2 16 0.072 12 8.4 0.1 3 23 37 57 35 57 0.91 3 16 3.7 6.1e+02 3.0 0.6 1 23 64 88 64 88 0.79 4 16 0.00038 0.061 15.6 0.3 1 21 96 116 96 117 0.95 5 16 0.0021 0.35 13.2 2.1 1 23 125 147 125 147 0.99 6 16 0.014 2.3 10.6 1.1 1 23 153 175 153 175 0.97 7 16 0.00035 0.057 15.7 4.5 1 23 181 203 181 203 0.95 8 16 0.013 2.1 10.8 2.3 1 23 209 231 209 231 0.96 9 16 0.00015 0.025 16.8 0.6 2 23 437 458 436 458 0.95 10 16 7 1.1e+03 2.2 6.1 2 23 473 495 472 495 0.93 11 16 2.1e-05 0.0033 19.6 0.8 2 23 500 522 499 522 0.96 12 16 4.4e-05 0.0072 18.5 1.2 1 19 532 550 532 552 0.96 13 16 0.00087 0.14 14.4 0.9 1 23 561 583 561 583 0.98 14 16 0.012 1.9 10.9 1.6 3 23 591 611 590 611 0.98 15 16 0.00028 0.046 16.0 1.2 1 23 617 639 617 639 0.93 16 16 1.3 2.2e+02 4.4 3.5 1 23 645 667 645 667 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAGgTCGAGAAGAAATCCTGTAAAATATGTGGACTTACTTTCGAATATAAAACTGTGCTGGACAGACATTTGGTAACACACTCTGGTAAGGTAGACTTTTGGTGCAAGGTATGCTTCAAAGCTTTCGCCAGCAACGATGAAGCTGAAAACCATGCAGTACAACACAAGGCGAAGCTAAACAAGTTTAAATGCAAGATTTGCAAAGATCAAACTTTTGATGTCGAAGAAAAGTATTTGTATCATGTCACAGTTGTCCATAAAGGAAGGTTTGTAGATAATTTCATGTGCAGCGATTGCGGTAAACAATACCGCTGGAAAAGCGACTTGACAACTCATATAAATTCAAAGTGTGGAACTGTTAAGTTATATCAATGTCAGACGTGCAACCAAAAACTAATGACTGCTGGCTCATTACACAACCACATGCTTCGCCATAAAGGTGATCTTTCATTCATGTGCAGATTCTGTGCTAAACTCTTCCACACCGCAGGAGAGCTTAAAGTTCATGAGAGAATCCACACCCAAGACAAGGCTTACACCtgcaaaATTTGTGGGAAAGGTTTTTGTCATAGGCAGAGTCTGGTCACCCACAGTTCGCTGCACACTGGCGTTAAACCGTACTTATGTGAAAACTGCGGAAACTCTTTCAGCTGCATTGGAAATTTATTAAAGCACCGTAAAACACATTCTGAAACATGTGGACTAATACCACTTACAACTCATAGGGTCAAACATCCATCGACGAGAATAAAAGTGAAAGTCAACACCCCTAGGAACTCTAAATTAAAGGCTGTACAAAAAGAGAAAGAGCTTCAAGAAAAATTGGCAAGAGTCGAGACTGAATTAGCAAATGtacaaacacaaaatatatcAACAAGTGATACAGCGTATCCTtgcataaatatacaaaatttattggTGGATTCTATACCATTAAGTAGTAACCAGAATGCAACATCGAGAACCAATGATGGGGAAATTTTAAGCAAACATGAAGAATCAAATAAAATCTCAGACATAATCAAAACTGCACAAACCAACGTAGATTTAAGTCACAAGTCGcatttaaataatactaaacCATCAAATCATATGCTCTGGAATAGTGAAGTGCATGATTTCCCTTTAAACAATACAGAATCTCCGACTGAAAACGATTCTGATTCGCAAAATGAAGATGAACTAGAGAACTGTGGACAGAACGAAACTCGAagtaaaaacagaaataaacataGGAAAATAACAAGCTGTGAATTAAAGACATTCATACACGAACGAGGTATTAAGGACAAAATGAATAGCGTTTGCAAATACTGTCAGAAAATCTATAGAAACCCAAGGTGGTTAATGCGACATGAAAAGGATCACGAAGAAGTGAAAACTGACTTGGAAATTAATGCAAATGCGATTAAATGTAGCTGCTGCAAGGAGACATTTTCAACAAAAGAAGAGTGTAGGGATCACCAACAAAATACTCACGCCGATATTTTAAGCTGCCAAGAATGtgataaaatgttttcaaatgtcGATTCACTGCGATCACATGAAAAAACGTTCCACAAAGGTGTTAAGCGAAAAGTTTAcacctatgtgtgtgaaaaaTGTGGTGAGCAGTTCAAACACAAATCGACGCTAAAGACACATGAGGATAATAACTGTAGTGTTGGCCCGCTATTCGAGTGCGAGATCTGCAAGAAGAAATTATCAAATGCATATGTGCGCAAGTCACATATGCGTATTCACAATCCTGAGAAAAAGCTGCTCTGCAAGTTCTGCGGCAAGAGTTTTCACTGGAAAGGCCAGCTGGTGATCCATGAGCGCAGCCACACTGGTGAGAAACCGTTTGCCTGCCTTTACTGCCCAAAATCGTTTGTCCACCGAGAAAGCCTCATAACACATAGTAGCCTACATACAGGGATCAAACCGCACTTTTGCAAGGCATGTGGCTCAAGGTTTTCATGTATAGGAAACCTAATTAAACATCGTGCAACACATTCAAAGACGTGTGGGGAATGGTACACTAGAAATGaatgtaatgaaaaataa
- Protein Sequence
- MEQVEKKSCKICGLTFEYKTVLDRHLVTHSGKVDFWCKVCFKAFASNDEAENHAVQHKAKLNKFKCKICKDQTFDVEEKYLYHVTVVHKGRFVDNFMCSDCGKQYRWKSDLTTHINSKCGTVKLYQCQTCNQKLMTAGSLHNHMLRHKGDLSFMCRFCAKLFHTAGELKVHERIHTQDKAYTCKICGKGFCHRQSLVTHSSLHTGVKPYLCENCGNSFSCIGNLLKHRKTHSETCGLIPLTTHRVKHPSTRIKVKVNTPRNSKLKAVQKEKELQEKLARVETELANVQTQNISTSDTAYPCINIQNLLVDSIPLSSNQNATSRTNDGEILSKHEESNKISDIIKTAQTNVDLSHKSHLNNTKPSNHMLWNSEVHDFPLNNTESPTENDSDSQNEDELENCGQNETRSKNRNKHRKITSCELKTFIHERGIKDKMNSVCKYCQKIYRNPRWLMRHEKDHEEVKTDLEINANAIKCSCCKETFSTKEECRDHQQNTHADILSCQECDKMFSNVDSLRSHEKTFHKGVKRKVYTYVCEKCGEQFKHKSTLKTHEDNNCSVGPLFECEICKKKLSNAYVRKSHMRIHNPEKKLLCKFCGKSFHWKGQLVIHERSHTGEKPFACLYCPKSFVHRESLITHSSLHTGIKPHFCKACGSRFSCIGNLIKHRATHSKTCGEWYTRNECNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -