Opun041413.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_951805005.1
- Location
- OX638143.1:58946763-58949669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.6 1.2e+03 2.0 0.0 2 23 7 28 6 28 0.90 2 15 1.4 2.2e+02 4.4 1.9 1 23 480 503 480 503 0.87 3 15 0.098 16 8.0 0.0 2 23 588 610 587 610 0.91 4 15 1.6 2.6e+02 4.2 3.6 1 23 618 640 618 640 0.93 5 15 0.00013 0.021 17.1 1.7 2 23 643 664 642 664 0.97 6 15 0.0053 0.87 12.0 1.5 1 23 670 692 670 692 0.98 7 15 2.7e-05 0.0043 19.2 5.3 2 23 699 720 698 721 0.95 8 15 0.8 1.3e+02 5.1 1.1 6 23 735 752 733 752 0.96 9 15 3.9e-05 0.0064 18.7 1.8 3 23 759 780 758 780 0.97 10 15 0.29 47 6.5 0.0 2 23 796 816 795 816 0.96 11 15 0.00049 0.08 15.2 0.9 1 20 822 841 822 844 0.91 12 15 0.00077 0.12 14.6 0.2 1 23 852 874 852 874 0.99 13 15 0.00049 0.079 15.2 3.5 1 23 880 902 880 902 0.98 14 15 1.3e-06 0.00021 23.4 3.5 1 23 908 930 908 930 0.98 15 15 0.00076 0.12 14.6 6.4 1 23 936 958 936 959 0.95
Sequence Information
- Coding Sequence
- ATGGAGGCAGACAATATAGTGTGCCCCGTGTGCACGCTGTATTTACGCCCCGGCATCACCCTGAAATCCCACCTGGCCAGCCACCCCAAGCAGAAGGTGATCGATGCCCTGGTTAAGCTATCGCATGTGGATGTTGAGAAGCAGGTGGTCAGCGCGGTGGCGAGTCCTGGGCAGGCGGGGCCCAGCCAGCCTTGGGCCACGCTACCGACGAACACACCCATCGCTGCTCAGCAGACGATGCAGGGTAATCACTCGTTTATATACCAGCAGTTCATGAGCTCGTCGACGCCTCAGTCTAACGTTCTCAACGTGAATCAACTCGGGCAGCAGTACGTCACTGTTCCCACcgtgtttaatttgcaaatgatGTGTCCGCCGTACCTCTACCAACAGCAACAGGTTATTATGTCTTCAGGATCGCAGCTGTCTCCGATGCCCCGGCTGTTACCCATCGAGCAGGATGAAGCTCCCATCAGGGATCACTTGCTCGAGGAAATATATGAGGAGGAGCAAGAGCCTGATTTGGTCATCATAGAGCATAACCATGAGCAAGATAACGTCGATGTTTCCCCCGCCCCGGAATTTGATGAGAACACTGATGAGAGTGGCGACGAAGAGAGGGAGATTAAAGAGTACGACGACATTGCTTCGTTGGATTTTAAGGAGCAAATAATTATGGGCGACAAAGTTTTATCTTTTGACCAACCTTTGGAGATGATTGACGTGAACACGCACGAATATGACGAGCAGGACCGTGAATTGGGGTCACCCGGTTCAAACGCAAGCTCCGATTACATTAGGGTCCGTAAGGATTTAAACAAGTCTTGTCAAACGCAGACCATGCCTGAATCAAATGAAACCGTATTTACTGAACAAAAAGTGTCGTATGTGCGAACTGACGAGATTCCAAGTTACGTAACATTAACAAACTCGAACGAGAGCGAAGGAGGCATGGGTTTATCCGTGACAAGCGGGGAGCATCAAGCTggtgttaatatcgttgatatgGATGGTATGAATTTAATGTTGAACAGTGAATTTGTGCAAGGCCAAATAATCGCCCAAGTAGAGGACTTTGAGTATAGCAATAGGTGTGAGAGGCCTCGTCTGCTGATGAATATAGGGGATTATTCAGTAGGTAGAGAATTGGGCGATGAGAGTGTGTCTGTTGACAGTACGAACATACGTGCAGATGAGCACATGCCTCCACGGGGCGAATTGTCCGGCCAGGAAAGCAATGCAAGTGATATGGCCTGGTCGAGGATTCAATACAACGAGGGCAATTCGCGTGCATCTGGCTCATATGACCTGCTTGCCCGCGAAACATGGGATGGATCCGATGCCTCTGATACTGATGTACCCCCTTTGCAGAGCCGTGATCCTGCAGTTTACGATGATACACCTACGATTTCGGGTTACTCGGAGCCGCCTATTCAGTATAGATGCCCCAcatgcagtgaaaattttaattgcccGAAAGAGCGGCGTGTTCACCAGGCGGAAAAGCACCAAAAAGACGATGTGGTAAAAGATAAAGAAGTCGGTTCAAAGCTTGGCAAGAAGAAGGTTAAAAAGATCATCATAAAGCCCAAGAAGGAGATagttaaaacagaaaataattttgataacgttttcaaattgaaaatggaaaCCAGCGAAGTGGAATCTGAACGTACAACTGTGATCCTTGAATCGAAAACTCAAATAATGGACGTCGATAAAGTTGACAAGGTAGAAGACCCGTTAATTTTGAATCCCATGGTATGTACGGTATGCGACGCTGTCCTCGCCGACAACAATGCGCTTAAATTACATCAAGCCGATGTGCACCAATTTACTCCGGGGGAACGTTACAAATGCAATATCTGTTTAGAAACTTTTTCATGTGAACCCAAGTACACAGAACATTTACACATTCATCCATTAGAATGCAGGATATGCGGTAAATACTTCTATAGACGGCAAAATATGCAACTCCACTTGAAACGGCATCTGGGTATTAGACCTTATAAATGTAACGTTTGCGAAAAATCTTTCCTTACAAAGCAGAAATTAGAcgaacataaaaatatacatacgGGAGAAACTCCTATCAAGTGCAATATGTGTGATGAAACTTTTAGAAGACATTCGAACTTAGTACAGCACCGAAACCGACATCATTacaacctaaaaaaaaaaactaaagattaTATATGCTCCTGCGGCGAAATTTTccactcaaaaaaaaaactcgcctGGCACAAAGAGATCCACGACAACAAACCTAAGGCGTGCACCCAATGTAGCGAAAAATTCATACATTCGGCCAGCTTGACGAGGCACATGCGGCGTGCACATAACGAACGATTCGTGCCCAAGGAAGATCGCAGCGTCGAGAATGTTGAGTGCCCCATATGCAAGGGCGTGTACCTGCGTTCCTCTTTGGATGTTCATATTAGAAACCACAGTGGCCAGCGGCCGTTTGCGTGTCTCATATGCAACAAAGACTTCACCACCAAGTGGAACCTCAAGCTCCACAAGTGGACGCACGCGGCTCGTGCAAACAAGCCATTCAAGTGTGACCTGTGTAGGGGGGCATTCATCCGCGAGTCCGACTACGTGGCGCACATGAACTCGCACAAGTCCATCAAACCCTACACCTGCAACTACTGCGGCGCCCAGTTCATCAGGAAGTATAACTGCCAGAGGCACGTGCGGGAGCATGAGAAGACAAAGACGTTCAACTGCCAGGTGTGCGGTAAGAGCTTTCACAGGTCTTACTATCTGAAGGATCACATGCGCGTTCACAGCGGTGTTCGGCCGTATGCGTGCCACATCTGCGGGAAGACGTCCACCACGAAAAGTAATCATAACAAACATGTTAGAATTCATCACGCCAGGGAACCGGTCAGCACTGAGAATTAG
- Protein Sequence
- MEADNIVCPVCTLYLRPGITLKSHLASHPKQKVIDALVKLSHVDVEKQVVSAVASPGQAGPSQPWATLPTNTPIAAQQTMQGNHSFIYQQFMSSSTPQSNVLNVNQLGQQYVTVPTVFNLQMMCPPYLYQQQQVIMSSGSQLSPMPRLLPIEQDEAPIRDHLLEEIYEEEQEPDLVIIEHNHEQDNVDVSPAPEFDENTDESGDEEREIKEYDDIASLDFKEQIIMGDKVLSFDQPLEMIDVNTHEYDEQDRELGSPGSNASSDYIRVRKDLNKSCQTQTMPESNETVFTEQKVSYVRTDEIPSYVTLTNSNESEGGMGLSVTSGEHQAGVNIVDMDGMNLMLNSEFVQGQIIAQVEDFEYSNRCERPRLLMNIGDYSVGRELGDESVSVDSTNIRADEHMPPRGELSGQESNASDMAWSRIQYNEGNSRASGSYDLLARETWDGSDASDTDVPPLQSRDPAVYDDTPTISGYSEPPIQYRCPTCSENFNCPKERRVHQAEKHQKDDVVKDKEVGSKLGKKKVKKIIIKPKKEIVKTENNFDNVFKLKMETSEVESERTTVILESKTQIMDVDKVDKVEDPLILNPMVCTVCDAVLADNNALKLHQADVHQFTPGERYKCNICLETFSCEPKYTEHLHIHPLECRICGKYFYRRQNMQLHLKRHLGIRPYKCNVCEKSFLTKQKLDEHKNIHTGETPIKCNMCDETFRRHSNLVQHRNRHHYNLKKKTKDYICSCGEIFHSKKKLAWHKEIHDNKPKACTQCSEKFIHSASLTRHMRRAHNERFVPKEDRSVENVECPICKGVYLRSSLDVHIRNHSGQRPFACLICNKDFTTKWNLKLHKWTHAARANKPFKCDLCRGAFIRESDYVAHMNSHKSIKPYTCNYCGAQFIRKYNCQRHVREHEKTKTFNCQVCGKSFHRSYYLKDHMRVHSGVRPYACHICGKTSTTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -