Opun045654.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638144.1:33798410-33805210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00099 0.16 14.3 5.8 1 23 104 126 104 126 0.97 2 11 0.002 0.32 13.3 14.5 1 23 132 154 132 154 0.96 3 11 7e-06 0.0011 21.0 4.9 1 23 160 182 160 182 0.99 4 11 0.00047 0.077 15.3 2.5 1 23 188 210 188 210 0.95 5 11 1.8e-05 0.0029 19.7 2.2 1 23 216 238 216 238 0.96 6 11 5.5e-06 0.0009 21.4 1.0 1 23 244 266 244 266 0.98 7 11 0.00017 0.027 16.7 2.6 1 23 271 293 271 293 0.97 8 11 4.1e-05 0.0067 18.6 1.9 1 23 299 321 299 322 0.96 9 11 0.00088 0.14 14.4 0.0 3 23 334 354 332 354 0.96 10 11 0.0024 0.4 13.0 4.1 1 23 407 429 407 429 0.96 11 11 9.6e-05 0.016 17.5 5.7 1 23 439 461 439 461 0.97
Sequence Information
- Coding Sequence
- ATGTGCGCTACAACAAACTTCGCCTACTGGCAAATGGAGGCCCAGAACACAGCAGAGGACTTACATAATTATTCCATACAAAACGTACTCCAGGACGCGCAGAAGGTGAAGATACGCAAGCCGATGTTCTTCATGAACAAGCAGGAGCCGCCCCCGGAGAAGCTCGAGAAGCACCTGATCTCGCCGTTTGCCACCGTGCAGCTGACCCCCGAGGAGTACAGCCAGATACTGACCAAACGGCACGAGCACGTTGTCCAGAAGACCGAGAACCCTGCGCCCGAGGAGGGCGCCCAGAACAAGATCCGGCCGTTCTCCTGCAACGAGTGCGGCAAGACGTTCCTGCTGAAGCACCACCTGACGACGCACGAGAAGACGCACAGCGGGATCAAGCCGCACAGCTGCCACCACTGCGGCAAGTCGTTCACGCACAAGCACTGCCTGAACACGCACCTGCTGCTGCACTCGAGCCAGCGCCCATACCAGTGCCCCGAGTGCAAGAAGAGCTTCACGCTGAAGCACCACCTCATCACCCACTCGAGGGTTCACAGCCGCGAGCGCCCGTTCATATGCACTGAGTGCGGACGCACGTTCCCGTTAAAAAGACACTTAGTTACGCACAGCAAGTTCCACGCCGGTGAGCGGCCTCACGTTTGCAATGAGTGCGGCGAGTCGTTTGCGCAAAAAGACCACCTGGTGATGCACTCACGGTTCCATGGCTCGATCAACTCGTTTGTGTGCGCTGACTGCGGCGCGTCGTTCACCCGCAAGTTCGAGCTGGTGAACCACCACAGGCTGCATGGCAAGCTGCCGCACTCGTGCCCCATATGTCAGAAGGAGTTCCTGCAGAAGCGGACGCTCATAACTCACATGAGGTATCACAACGGCGAGTATAGTTTCTCGTGCTCTAGTTGCGGGGAGACGTTCCAGATGAAGTCGGAGCTGAACTTGCACATTAAGATGCACCATGACAGCGGCAGCTCGCTGGACAAGCCGCTCGCCTGCAACGAATGTGTGCTTACGTTTAACACACCAGAGGCTTTGGCCCTGCACATTAAATTACATAGTGGCGATTCTCTTTTAGTAAACGATCTCTGTACTTTAACGGCAAGTTTGCACcaccaaaattttacaatgaacAGTGGGATTACCGGTAATAACTATCAGTACAAtaagaatattaattataacaagGTTAACACTATGCAGAAAATAAAGCCTCACATTTGTAAAGTCTGTTCGAAAGCGTTTAGTGCCAAACACGGGCTGCAGCAGCACAATAAGAGACACCCAGACGGCACCTGCGCCCTAAAGTCGCACGTATGCTCCTACTGCAATAAGGGATTCTACCAGAAGAACCATCTGTTACTCCACCAAAGGCAGCATATGGATTTAAACAAGGTAAAGGCGGACGTCATGGACTCTAAGACGGACGTGGCGCTGATCAAGAACGAGACCGCGCCAAACGGCGAGATGGAGTGCGGCCTCTCCGAATTCTCATAA
- Protein Sequence
- MCATTNFAYWQMEAQNTAEDLHNYSIQNVLQDAQKVKIRKPMFFMNKQEPPPEKLEKHLISPFATVQLTPEEYSQILTKRHEHVVQKTENPAPEEGAQNKIRPFSCNECGKTFLLKHHLTTHEKTHSGIKPHSCHHCGKSFTHKHCLNTHLLLHSSQRPYQCPECKKSFTLKHHLITHSRVHSRERPFICTECGRTFPLKRHLVTHSKFHAGERPHVCNECGESFAQKDHLVMHSRFHGSINSFVCADCGASFTRKFELVNHHRLHGKLPHSCPICQKEFLQKRTLITHMRYHNGEYSFSCSSCGETFQMKSELNLHIKMHHDSGSSLDKPLACNECVLTFNTPEALALHIKLHSGDSLLVNDLCTLTASLHHQNFTMNSGITGNNYQYNKNINYNKVNTMQKIKPHICKVCSKAFSAKHGLQQHNKRHPDGTCALKSHVCSYCNKGFYQKNHLLLHQRQHMDLNKVKADVMDSKTDVALIKNETAPNGEMECGLSEFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186469;
- 90% Identity
- -
- 80% Identity
- -