Opun026477.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638141.1:44763031-44778189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.5 1.2e+03 2.1 0.1 6 15 60 69 58 72 0.82 2 20 0.00088 0.14 14.4 2.1 2 23 217 239 216 239 0.96 3 20 4.9 8e+02 2.6 0.5 1 21 358 378 358 379 0.92 4 20 0.00025 0.04 16.2 2.7 2 23 554 576 554 576 0.96 5 20 0.0015 0.24 13.7 2.3 2 23 588 609 588 609 0.97 6 20 0.00013 0.021 17.1 0.1 2 23 617 639 616 639 0.97 7 20 0.00016 0.026 16.8 0.1 1 23 649 672 649 672 0.94 8 20 0.003 0.49 12.8 2.7 1 23 674 696 674 696 0.98 9 20 0.0061 0.99 11.8 0.1 3 23 717 737 716 737 0.95 10 20 0.002 0.33 13.3 0.6 1 23 756 779 756 779 0.96 11 20 0.74 1.2e+02 5.2 0.0 2 23 791 812 790 812 0.95 12 20 0.0021 0.34 13.2 7.6 1 21 837 857 837 859 0.95 13 20 1 1.6e+02 4.8 1.5 3 23 881 901 879 901 0.96 14 20 0.013 2.1 10.7 0.1 2 23 941 963 940 963 0.94 15 20 0.00014 0.022 17.0 4.5 1 23 979 1001 979 1001 0.94 16 20 7 1.1e+03 2.2 0.1 1 23 1033 1056 1033 1056 0.89 17 20 0.12 20 7.7 0.2 2 23 1067 1088 1066 1088 0.94 18 20 0.00022 0.037 16.3 1.8 3 23 1100 1121 1099 1121 0.96 19 20 9.2e-05 0.015 17.5 0.6 1 23 1130 1152 1130 1152 0.98 20 20 0.0016 0.27 13.6 0.2 1 23 1171 1194 1171 1194 0.94
Sequence Information
- Coding Sequence
- ATGATGGAGGCTAGAATAGTGAATTACACTTCATGCTGTCGTCTGTGCTTGACCGACAAGCACAACTCCTTGAACAGCATTTATAGTGGTTACTCGGACAGTGATGGCCTGGTCGAAAAAATCAGCTTATTAGTCGGCGTACAGaTAAATGTAACAGACAAATTCTCCACGATGCTCTGTGACAAATGCTTCAGCACCGTGACAAATTGGGAGTTGTACAAGAAGATGTGCTTAACGAATCAGACAAAACTGCAGCAGTGGATGGACAATGAGAGCATCTCGAACTCGACTATTCAAATAAAAGAAGAGCCAATCGATTGcgaagaaaacaatgaaataatccACATTAACAACCAGGAAGAGGATATAACTATTAAACCCGAACCCATAGAACTAGATGATCAACTATTTCTAGATGTGCCACCACTGTTATCACCACATCATCCTGAAGGTAATGATGATGAAATCGAGGAGGAGATTGCCACAGAAAATCATAATGAACCTGGTCTCCTAAACCATCAGATAACTGTTTACAAGATATCGGTGGATGGAAAGGTCACCCCATACTATTGCTTTTACTGTTGCTTGATCCTTTTCTTTCTATTAGAAGGTCGGGCTGAGGTCTCGGTAGAGTTAAAAGACCCTAAAACCTGCACGGTTTGCAATAAGCAGTTCAGTTCCTTGAGTAATAGGAATAAGCATGAAAAAGTAATGCATGGGCTTCACAAGACCGCTAAATATCCTTCTCATGCTTTAGATGCGGTCCCTAAAGATGATGTGGAGCCTCAAGATTCGGAGGGAAACCCCGAAGGTGATAATTCTAATAAAACCGTTCCCGCTAACGAGAAGGATaaagaaaaaattgaatttgcaGCTGGATTATGCTTACAATCGAAATCTGTGGCCCCAAAGCAATCAGAATTGACTAAAATAGAACACAGTTACCTGGAGAAGTGCAGGATTATGATTTCCATGTTTAAAAAGGGGGTTTGTGCCTGTCACAATCACAACTATGGGTCTCTAAAAAAACTGCTGGGACATTTGAGGCAGCTGTATTCCTGGTTCCCGCCATACACTTGCTACAACTGCTTGTTGACGTTCGAGGGACGATCGGGGAAAATGAAGCACACACTGAGGTGCCCGAAAGTGAACTTTGAGTTTCTAATACGTCTGTCAGAGCTTCGCGCACGGACTGACGACAAAATAAGattgtaccaaaatttcaaatgcataCAATGTAATGTGCTGTTTGGGTTTTATGACGATTACTGCGAACACGTTGATAACGAGCATGTATCGGAAGAAGGTCCGCATACATGCTTATGTCTTCAAGATTTTGACAATGCAGACGTGTTCCGGCAGCACATTCATAAAGCATGCTACctaaattattattgtgatatttgtttCCTTTTGAGCCCAAGCTTAGAAGAGTTCCGACAACATTGCGAGGAATCGCATGACGTAGATGAAAACTTTTCGTTTTTGCCAGTCAGTCCCAAGTTTAATGTACTGAACAACATAGAAATCGCTAATATGTTAGTCCACAGCAAAGAAAAGGAGGTAGAACCAGAACCGGATGTAATGTTGGAGCCTCTAAAACCTGATGATGAAGATGGTAgagcaaattttattacaaccGGTTCCAAGGGTTCGGCCagttgcaaaatatgtaataaagttTATTCCAGTTATCATAATATGTTGCGGCATTTAAAGGTCTTCCATAATATTGACGAGATGCCGAAAGTTTTGAAAAACGAATGCACTATATGCGGCAACGAGTTTAGCAATTATCACAATATGCTGAGGCATCGCAAATTACATGAAGATGACCAGAAGACATTACAGTGCCCAGATTGTCCAGAAAAATTCCGTTTAAACATTGAATTAAAAGAGCACTTAAACACGATCCACTCGTCTGTCCGGAGTGTGCGGTCGCTCTATAAATGTGAAGATTGTGGCGAAGCCTTTAAGAATCCAAAAGCTCTGGAATTCCACCAAGAAAGTGAGCACGTCTTCAAGTGTGACGATTGTGCCAAAGAGTTCCACAAATCTTCGGATTACGAACAGCACCGAACCGTACACTTAAACATAACGCTTACTAGAGATcctaaaactcaaaattatCAAAGCGTCAATAAGATGTGTCAGGCTTGTGATAAGGCATTCCAAACGGATGCGGAATTGCAAAGTCATATGCTTCTCCACGATAAAATGCCTACGCTTGACATAGAAGAAGTAGATTCGAAAGATTTTAAGAAATACGCTTGCAGTGATTGCAATAAAGTGTACCAGAGCTCACGTGGCTTGTGGGTTCATAATAAACGGTTTCACCCAGGCAGAACAAGCAATAAAGACTTCCCTAAACCATGCGATGAATGTGATCGGATTATAACGACACTCCCGGCTTGGATTATGCACAAACAGATGCACGAAAGAACCACTATGAGAGCATACAATATACACAAAGTTGTAGATGCAAAAGGGAACGATGATTCTGATTACCACACGTGTAAGCGGTGCTTTAAAGTTTTCGCTAgcaaatacaatttaaaaactcATATGAAATGTCACGGAATTAATTTGAACTCGTCCAGAACATACACGAAAACGGGGAAATTCCACAAGACATTTTGGTGTGATATATGCCACCAAGCATGTCAAGGTGTTGCGGATTTAAACAGACATAAACAAGAGCATTTGAACGAAGATTTGCCTGAATTGGAGAACAATTTAGAAATTACTGAGGTACGAAAGCCGCAAAAAAGAATGTATCAGTTTAAAAATTCTATGGAGATTGAAGAGAGGACACaagtttattgtaaatattgtaaaataccaTTTGATAGCGTGCCTGATTTGAATGAGCACATGGATAACGAGCACGAGGAGAGTATGGACGTGAAACCTATAAAAATCTTCAAAGGTAGATACTGTTGTGACTTGTGTAATAAAACGTTCACCACGTCATCTGCACTGTGTTCACATCAAGGATGGCACAAACGAGGTAATGTTACTAGGACTATAAAAACGGAAAGCAAGCTTTATAAGAAAGTTTTAAATACTTTTGCAGAGCCGAAAGGTAATCCTAAATTCAAATGTATTTCCTGCGCGGAAGCGTTTGATGACGATACTACTCTTCAGTTGCACATCTTAGAAGTACATAGAAACATCAATGCTACAATTTTGACTATAAAATGTACTCTGTGTAATTTAGAATTTAACAGTCAAGCAGAGTTTGATGGTCACGAGAAATTACATTACAAGCAGAAAGACAACAAGACAGGCGTTTTGTGCCGGTTTTGCAATAAAATGTTTAGTCGCAGTGATTACCTAAACATACACATTAGCAAAAAACATCCTCAACATGCCGTGGTGGGTAGTTTCAAATGCAACCAATGTGAGcggatttttgaaaaacaaaatgctTTAACTATACATTTAAAGGTGCACGAGCGATTGAATTCCAATGGCAATAATTCCCAAGCGTCAGGCAAAGTATTCAAGTATTCTTGCTCAATTTGCCACATTGGCTTCAACATCCCCAAGGACCTGAGGAACCACATAATAGCGAACCATCCTTTCTGA
- Protein Sequence
- MMEARIVNYTSCCRLCLTDKHNSLNSIYSGYSDSDGLVEKISLLVGVQINVTDKFSTMLCDKCFSTVTNWELYKKMCLTNQTKLQQWMDNESISNSTIQIKEEPIDCEENNEIIHINNQEEDITIKPEPIELDDQLFLDVPPLLSPHHPEGNDDEIEEEIATENHNEPGLLNHQITVYKISVDGKVTPYYCFYCCLILFFLLEGRAEVSVELKDPKTCTVCNKQFSSLSNRNKHEKVMHGLHKTAKYPSHALDAVPKDDVEPQDSEGNPEGDNSNKTVPANEKDKEKIEFAAGLCLQSKSVAPKQSELTKIEHSYLEKCRIMISMFKKGVCACHNHNYGSLKKLLGHLRQLYSWFPPYTCYNCLLTFEGRSGKMKHTLRCPKVNFEFLIRLSELRARTDDKIRLYQNFKCIQCNVLFGFYDDYCEHVDNEHVSEEGPHTCLCLQDFDNADVFRQHIHKACYLNYYCDICFLLSPSLEEFRQHCEESHDVDENFSFLPVSPKFNVLNNIEIANMLVHSKEKEVEPEPDVMLEPLKPDDEDGRANFITTGSKGSASCKICNKVYSSYHNMLRHLKVFHNIDEMPKVLKNECTICGNEFSNYHNMLRHRKLHEDDQKTLQCPDCPEKFRLNIELKEHLNTIHSSVRSVRSLYKCEDCGEAFKNPKALEFHQESEHVFKCDDCAKEFHKSSDYEQHRTVHLNITLTRDPKTQNYQSVNKMCQACDKAFQTDAELQSHMLLHDKMPTLDIEEVDSKDFKKYACSDCNKVYQSSRGLWVHNKRFHPGRTSNKDFPKPCDECDRIITTLPAWIMHKQMHERTTMRAYNIHKVVDAKGNDDSDYHTCKRCFKVFASKYNLKTHMKCHGINLNSSRTYTKTGKFHKTFWCDICHQACQGVADLNRHKQEHLNEDLPELENNLEITEVRKPQKRMYQFKNSMEIEERTQVYCKYCKIPFDSVPDLNEHMDNEHEESMDVKPIKIFKGRYCCDLCNKTFTTSSALCSHQGWHKRGNVTRTIKTESKLYKKVLNTFAEPKGNPKFKCISCAEAFDDDTTLQLHILEVHRNINATILTIKCTLCNLEFNSQAEFDGHEKLHYKQKDNKTGVLCRFCNKMFSRSDYLNIHISKKHPQHAVVGSFKCNQCERIFEKQNALTIHLKVHERLNSNGNNSQASGKVFKYSCSICHIGFNIPKDLRNHIIANHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -