Opun054889.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638146.1:15634437-15641782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 1.9e+02 4.6 7.3 1 20 600 619 600 621 0.94 2 17 0.016 2.6 10.5 5.5 1 22 625 646 625 649 0.90 3 17 0.0016 0.26 13.6 1.8 1 23 719 741 719 741 0.95 4 17 2e-05 0.0033 19.6 2.8 1 23 758 781 758 781 0.96 5 17 1.7e-05 0.0027 19.8 1.6 1 23 790 813 790 813 0.97 6 17 0.00014 0.022 17.0 2.5 1 23 829 852 829 852 0.97 7 17 0.0042 0.68 12.3 5.7 1 23 868 890 868 890 0.98 8 17 0.00014 0.023 16.9 3.2 2 23 909 931 908 931 0.95 9 17 0.05 8.2 8.9 5.0 1 23 947 970 947 970 0.96 10 17 3.9e-05 0.0064 18.7 2.9 2 23 982 1004 981 1004 0.96 11 17 0.0082 1.3 11.4 0.3 1 23 1013 1036 1013 1036 0.95 12 17 5.1e-05 0.0083 18.3 1.0 1 23 1048 1070 1048 1070 0.95 13 17 0.088 14 8.1 7.8 1 21 1076 1096 1076 1098 0.95 14 17 2.5e-05 0.0041 19.3 1.8 1 23 1104 1126 1104 1126 0.99 15 17 0.00075 0.12 14.7 2.6 1 23 1132 1155 1132 1155 0.98 16 17 9.3e-05 0.015 17.5 0.2 1 23 1161 1183 1161 1183 0.98 17 17 3.9e-05 0.0064 18.7 3.4 3 23 1191 1211 1189 1211 0.96
Sequence Information
- Coding Sequence
- ATGCCCGAATCACTTGAAAACGACCTAATCTGCAGGACATGCTTGTCGAAAAGCTTAGACATGATTTCTGTGTTCACCATGCATGAATTCGAGCAAACATTGTCCACAGCGTGCGATTTAATCCTGACGTGTGCTTCTGTGCAGATTTGCGAAGGAGACGGTTTACCTCAACAGGTGTGTGCTCGGTGCACAGATGAAATGAAGAGGGCATTTGCTTTCAGGAAGTTATGTGAGAAGTCAGATGCCACACTACGAGATCAACTAAATTCAGCCCAAAATATAAAACAGCATATTAAAACTGAACATCAAAACTACCCTGAGAATGAATCTACTGATGTAACAAACACTCAAGAACCTGAGAATGAATCTACTGTTGTAACAAACACTCAAGAACCTGAGAATGAATCTACTGATGTAACAAACACTCAAGAACCTGagattgaaaatgttgattttaaGGTCGAAATTACCGACACCAAAGTGACTGAACAAGATGTAGTTGCAACGAAAAGTAATTCCAATGAAgATATTTCAAAGTTTCGCAAATTACAAGCTTTGTTAAAATGGGCATCTAGAGGATACGTTCCTAAAAAATCGAGAATTTTGGAGCAGGAcgatatcaataaatttataaacttaGCCGATGATAAGATGTACCTCGCAATAAAAgtAATTCTGATAATCGGATATAGTGGTGCCTGTAGAAGAGAGGAGTTGACTCATATGTCCATTGACAATATAGAATTTAAATCAGACTGCATCATTGTCTCTGTTcctaaaacaaaaaacaatgtaCCAAGAAAATTCACAATAACCGATGCGGATTgggttaaattaattaaaaattatgccaAACTTAGGCCTTACAGAGTCACCCACAAACGATTTTTCTTGACATACAGAAATGGTTACTGTATTCATACTCCTATTGGCATAAATTGTATCGGAAGAGTGTCCAAAGATATTGCAGGTTATCTCAAATTGCCGAATCCTGAATTATTTACAGGCCATTGTCTCAAAAGATCCAGCGTCACACATTTGGCAAATTCTATTGAAATGGAAATTGAAAACGATGTTGCTATTTCTGCAATGTCTCCGGAATGTCCCCAGATACCTCCAGAAATGCCGAAGATGGCGGGCCTAGCGACATTAAATTTAACGCTTAAATCgaaagaaacgtatgagaagTCTCTGAAACGGTTTATGAATTATTGTCAGGGTAATAATTTTGGGCGTCATTCAGAAAGGGTGATGCTTGCTTATTTCATGGATATGTCTAAAACGCTTGCGCTATCTACAGTAAGGGCCCACTACAAAATGCTAAGCATGACCCTGAATGTTACACAAAATCTAGATATCTCGAAATACTTGAGATTGCAGGCTTTTTTAAAGCGAAACTCTTACAGATTTAAGGCAAAAAGACCCATAACTTTAAATGCGGCACAAATACATCAATTTATTACGAAAGCTCCGGATGAGACTTTTTTATTTACCAAaGTAGCCTTAATATTTAGCGTAGCCGGTGCTTGTCGGAATGAAGACCTATTTAACATGAGAGTTAAAGATATCGAAGACTTAGGAGCCCTACTTCTAATTAACATACCGGGCAATAAAACGAATAAACCAAGATCGTTTATTGTGGATGATACTTTCTTAGAAAATCTCTGCATAATGTTCTACCTGCAGGATGAAGATGAAGTTAATGGTTTTGGTGGCGTTAATCTTGTGATTGACGAGCACAAGCCGTCTGTCGATGATTGTGACCCACTTGGCGAAAGGAAACCTCAAAAGAAATGCTTCTCGTGTAGTAAGTGCAAGAGGAGCTACTTGTACTCTCATCATCTGAAACGACACGTGTGCCAACCCATCCCTTTCTCATGCAAGACATGCAACAGAAGTTATTCACAGCCATGTGGTCTGAAACAACACAAGTGTATGCCGCAGCACACTTTTGTGGATAAACTTTTCAAGTGCAATATGTGCAGTAAGAAGTTTTTATGTAAACGCTATCTTCACGCACACGAAAAGAGAATTTGTCGTTCCGCCGGGTACATTGACGACACCACAGATAACAAGAATCAATTGCATCTAACGATGCAAAACACATATACCCCCTCACACATGCATAGCGATGATAAAGAAAAATCAGCAGCTTTCCTGTGCAGCGTGTGTGGCGAGGGTTGTTCAGACCGGTATagtttaaatatgcaccgaaaGAATCATATACGTGAAGCATCCAATCAAACAGTAATAATCGGTGGGAAAAAGcctttcaagtgtacagagTGTGAAAAGACGTTTGCACACAAAGAGTATCTTAGAAGTCACCAATACATTGTACATATCAGACATAACAAAGGAAAACCTTTCAAATGCGTTAAGTGCGGGAAACGCTTTGCAAATACGAGAAATTTGAAACTACATCTACTGAAGCTTCATAATATAGTCAAAAACGACACTGAGACACCTAATGAAGCAAAACCGTTCGAATGCAGTGAGTGTGGGAAGCGCTTTCAATATAGGAGAAGTTTAAAATATCATCTACTGAAGTCTCATAATATAGTTGGAAATGACAGTGAAACACATGAGGAAGTAAAACCGTTCGAGTGCCACGAGTGTATGAAATGCTTTACAACTATGAGAAATTTGGAGTATCATCAAATGCTACATAAGCTTCCTCATTCTGGGAACAACAGTGAAATACTTAGCGAAGCAAAACCGTGCCAATGCAGTGAGTGCGGCCAACGCTTCACAAGTATGAGAAACTTGAAACTTCACCAACTCAGACTCCATAATATGGTTAAAGATAACGGTGAGACACAAAAGGAAGCAAAACCATTCAAGTGTTTGGATTGCAGCAAGTGTTTTACAATTGCGAGAAATTTGAAATTCCATCAACTGAAGTTTCATGATGCAGTCAAAAATGAGCTCGAAAAGCCGTGCAAATGCAATGTTTGCGAGAAACGATTTCGATCGAATGCACAGTTGAATGGTCACAGACGAACGGTTCACAATGAAGCTATCGCTCAGGGACCTTTCGTGTGTAGTACATGCGGTTTAGAGTATAATTCTCACAGTGGTCTTGTGATGCACCGCAACGGAGTGCATGGCTCTCCTGTTAAAAAGAAGTCTCCCAAACACTACCTCTGCAATACTTGCGGCAAAAGCTTCACCACCAATGCTTTCCTAAAGGAACATAACAACATTCACACCGGCGAGAGGCCGTTTAAATGTAAGGAGTGCGACAAGCAATTTTCAACGTACTCGGGTTGCAAGTTGCACATGCGATGTCACACCAATGAAAAACCATATAAATGCAACTTGTGCGACAAGCGCTATTCGCAGTCGGGAGATCGGAACAGACACGTGAGATCGCACTCCGGTGTGAAACCGTACAAGTGCAAAGTGTGCGAAAAACCGTACGCCACACACCACGGTCTGGTGAGCCATGTACGGTCGAGGCACACCAATGAAAGGCCTTATGTGTGCAAGGACTGTGGCAAGGGATTCGTAACCACTGCCATACTCAAAGATCACATGACGACCCACTCCGAAGAACGCCCGCATTTGTGCAGTGTGTGTGGAAGGGGCTTTAAGCGGGACGACCATCTAAGAACACACATGAAAGTGCATAGACCAAAGAGTTAA
- Protein Sequence
- MPESLENDLICRTCLSKSLDMISVFTMHEFEQTLSTACDLILTCASVQICEGDGLPQQVCARCTDEMKRAFAFRKLCEKSDATLRDQLNSAQNIKQHIKTEHQNYPENESTDVTNTQEPENESTVVTNTQEPENESTDVTNTQEPEIENVDFKVEITDTKVTEQDVVATKSNSNEDISKFRKLQALLKWASRGYVPKKSRILEQDDINKFINLADDKMYLAIKVILIIGYSGACRREELTHMSIDNIEFKSDCIIVSVPKTKNNVPRKFTITDADWVKLIKNYAKLRPYRVTHKRFFLTYRNGYCIHTPIGINCIGRVSKDIAGYLKLPNPELFTGHCLKRSSVTHLANSIEMEIENDVAISAMSPECPQIPPEMPKMAGLATLNLTLKSKETYEKSLKRFMNYCQGNNFGRHSERVMLAYFMDMSKTLALSTVRAHYKMLSMTLNVTQNLDISKYLRLQAFLKRNSYRFKAKRPITLNAAQIHQFITKAPDETFLFTKVALIFSVAGACRNEDLFNMRVKDIEDLGALLLINIPGNKTNKPRSFIVDDTFLENLCIMFYLQDEDEVNGFGGVNLVIDEHKPSVDDCDPLGERKPQKKCFSCSKCKRSYLYSHHLKRHVCQPIPFSCKTCNRSYSQPCGLKQHKCMPQHTFVDKLFKCNMCSKKFLCKRYLHAHEKRICRSAGYIDDTTDNKNQLHLTMQNTYTPSHMHSDDKEKSAAFLCSVCGEGCSDRYSLNMHRKNHIREASNQTVIIGGKKPFKCTECEKTFAHKEYLRSHQYIVHIRHNKGKPFKCVKCGKRFANTRNLKLHLLKLHNIVKNDTETPNEAKPFECSECGKRFQYRRSLKYHLLKSHNIVGNDSETHEEVKPFECHECMKCFTTMRNLEYHQMLHKLPHSGNNSEILSEAKPCQCSECGQRFTSMRNLKLHQLRLHNMVKDNGETQKEAKPFKCLDCSKCFTIARNLKFHQLKFHDAVKNELEKPCKCNVCEKRFRSNAQLNGHRRTVHNEAIAQGPFVCSTCGLEYNSHSGLVMHRNGVHGSPVKKKSPKHYLCNTCGKSFTTNAFLKEHNNIHTGERPFKCKECDKQFSTYSGCKLHMRCHTNEKPYKCNLCDKRYSQSGDRNRHVRSHSGVKPYKCKVCEKPYATHHGLVSHVRSRHTNERPYVCKDCGKGFVTTAILKDHMTTHSEERPHLCSVCGRGFKRDDHLRTHMKVHRPKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -