Basic Information

Insect: Othius punctulatus
Gene Symbol: -
Assembly: GCA_951805005.1
Location: OX638144.1:34101404-34106530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.018 2.9 10.3 0.1 1 23 106 129 106 129 0.96

2 11 0.00035 0.057 15.7 5.9 1 23 183 205 183 205 0.98

3 11 2.1e-06 0.00035 22.7 3.4 1 23 211 233 211 233 0.97

4 11 1.1e-06 0.00019 23.5 1.3 1 23 239 261 239 261 0.99

5 11 0.00041 0.067 15.5 4.7 1 23 267 289 267 289 0.98

6 11 6.8e-06 0.0011 21.1 1.1 1 23 295 317 295 317 0.98

7 11 5.2e-05 0.0085 18.3 1.7 1 23 323 345 323 345 0.99

8 11 2.3e-06 0.00038 22.5 0.9 1 23 351 373 351 373 0.98

9 11 0.00012 0.019 17.2 1.2 1 23 379 401 379 401 0.98

10 11 5.3e-06 0.00086 21.4 2.1 1 23 407 429 407 429 0.99

11 11 7.9e-06 0.0013 20.9 0.9 1 23 435 457 435 457 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.018	2.9	10.3	0.1	1	23	106	129	106	129	0.96
2	11	0.00035	0.057	15.7	5.9	1	23	183	205	183	205	0.98
3	11	2.1e-06	0.00035	22.7	3.4	1	23	211	233	211	233	0.97
4	11	1.1e-06	0.00019	23.5	1.3	1	23	239	261	239	261	0.99
5	11	0.00041	0.067	15.5	4.7	1	23	267	289	267	289	0.98
6	11	6.8e-06	0.0011	21.1	1.1	1	23	295	317	295	317	0.98
7	11	5.2e-05	0.0085	18.3	1.7	1	23	323	345	323	345	0.99
8	11	2.3e-06	0.00038	22.5	0.9	1	23	351	373	351	373	0.98
9	11	0.00012	0.019	17.2	1.2	1	23	379	401	379	401	0.98
10	11	5.3e-06	0.00086	21.4	2.1	1	23	407	429	407	429	0.99
11	11	7.9e-06	0.0013	20.9	0.9	1	23	435	457	435	457	0.98

Sequence Information

Coding Sequence: ATGGATTTTATTAAAGTCGAAGATGGAGCGGATGGTTTGAATGACGGCGTAGTTCGAATTAAAACCGAAAAATATCCTCCCAAGGAGAATGGGGACCCACTATTTGCATTTGCAGCCGATGTCAAACAAGttttggtACCGCAGATAACTTTCGTGAATTGCAAGACTAATTGGAGCTCGGGTGAAGATAGTGAGCCAGAGGTGTGCAGAAGACTGGATGAGAATTGCATAGAACCTAAATCCGAATGTTTTCAAGACCATTCTTATGTAGTAAAAGTAGAAGAAGAAATGGTACAGATCAATAAAGTGGCGGCATATAGTTGTGAAATGTGCAACGCTACTTACGATGGCCTCGCAAGTTATGAAGTGCATTTAAGGGCTAAACACGGCAGTGACCATTCTGAAATATCGTCAGAAGGATCATCATTGCCTGAATTGAACACAATAACTACCGAGAGGAGACCCAAGGAAGAACACGGAGGAGGGAACTTGGACCAAAAATCTGTTCTTAACAAGCACGATGTGATCGACAGTAGGAAAAGGCCGTACAAATGTGACGTCTGCCCATCAAGCTTCACCCAAAAATGCCACTTGAACACGCACAAGATGAGCCACAACGGAGTCAAGCCGCACTCGTGTGATGTGTGCTCCAGAAGCTTCACCCAAAAATCCGACCTCATGAAACACAAAAGGATCCACACTGGAGagaagccttacaaatgtgatgcgTGCACCACAAATTTCAGCCGAAAATCCGATCTCAACAAGCACATGATGATCCACACCGGACAGAAACCCTACAAATGCGACCTGTGCACCTCGAGCTTCACCCAGAAGACGCACCTGAACATGCACAAGATGAGCCACACCGGGGAGAAGCCGTACAAGTGCGACGTATGCGCCTCGAGCTTCACCCAGAAATCTGACTTAAAGAAGCACACCATGATCCACACCGGTGAGAAGCCATACAAATGCGATGTGTGCCCATCGAGCTTCACCCAAGAGATCCACCTGAACACGCATAGGATGAGCCACACCGGGGAGAAACCATACAAGTGCGACGTGTGTACAGCCAGTTTTATACAGAAGAGCAACCTGAAGGTGCACAAGATGAGCCACACCGGGGAGAAGCCCTACACGTGCGACATATGCAACACAAACTTCAGCCAGAGGTCAGTCGTCAAGAagcacaagatgatccacacCGGAGAAAGGCCTTACAAATGCAATGTCTGCTCCTTAAGCTTCAACCAGCTGAGCAGCTTGAACAGGCACAAGATGCGGCACACCGGGGAGAAGCCCTACAAGTGCGACCTGTGCACGTCAAGCTTTATCCAAAAGTCCGATCTCAAGAAGCACGTGATGATCCATGCCAGGGAAAATCCCTACTGTGATTCTCGGAACGTGTTTCAAGGCGACGCACAAATAAATGTGCTCAGGCCTACCACAGTTAAAGATGAACTTGACGGAAACGAAAGCGTTTTCATTTCATGTGGAACATGCCCAACATAA
Protein Sequence: MDFIKVEDGADGLNDGVVRIKTEKYPPKENGDPLFAFAADVKQVLVPQITFVNCKTNWSSGEDSEPEVCRRLDENCIEPKSECFQDHSYVVKVEEEMVQINKVAAYSCEMCNATYDGLASYEVHLRAKHGSDHSEISSEGSSLPELNTITTERRPKEEHGGGNLDQKSVLNKHDVIDSRKRPYKCDVCPSSFTQKCHLNTHKMSHNGVKPHSCDVCSRSFTQKSDLMKHKRIHTGEKPYKCDACTTNFSRKSDLNKHMMIHTGQKPYKCDLCTSSFTQKTHLNMHKMSHTGEKPYKCDVCASSFTQKSDLKKHTMIHTGEKPYKCDVCPSSFTQEIHLNTHRMSHTGEKPYKCDVCTASFIQKSNLKVHKMSHTGEKPYTCDICNTNFSQRSVVKKHKMIHTGERPYKCNVCSLSFNQLSSLNRHKMRHTGEKPYKCDLCTSSFIQKSDLKKHVMIHARENPYCDSRNVFQGDAQINVLRPTTVKDELDGNESVFISCGTCPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -