Opun054893.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638146.1:15665471-15668616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0011 0.18 14.1 1.3 1 19 200 218 200 222 0.94 2 16 0.25 40 6.7 1.9 1 21 230 250 230 251 0.93 3 16 0.00089 0.15 14.4 0.6 1 23 259 281 259 281 0.96 4 16 0.078 13 8.3 5.4 1 22 310 331 310 331 0.96 5 16 0.0067 1.1 11.7 0.4 1 23 351 373 351 373 0.97 6 16 0.00095 0.15 14.3 0.1 3 23 441 461 439 461 0.91 7 16 8.6e-05 0.014 17.6 0.1 2 23 484 505 483 505 0.97 8 16 2.2e-05 0.0036 19.5 2.2 1 23 523 545 523 545 0.98 9 16 3.1e-05 0.005 19.0 2.9 1 23 556 579 556 579 0.96 10 16 0.021 3.4 10.1 0.1 2 19 592 609 591 614 0.91 11 16 2.6e-06 0.00043 22.4 1.4 1 23 626 648 626 648 0.95 12 16 3.6e-06 0.00059 21.9 1.3 1 23 654 676 654 676 0.99 13 16 0.00029 0.047 15.9 3.1 1 23 682 704 682 704 0.99 14 16 0.13 20 7.6 1.0 1 23 710 733 710 733 0.92 15 16 0.00013 0.021 17.0 0.2 1 23 739 761 739 761 0.98 16 16 1.1e-05 0.0017 20.5 3.7 3 23 769 789 767 789 0.96
Sequence Information
- Coding Sequence
- ATGTCTCCGGCCCTTGAAAATGACCAAATATGCAGGACGTGTCTGTCGGAAAGCCAAGACATGACTTGTGTGTTTAACAAACATGAAATGGAACACGCTGCAGCCAGAGTGtgcgatttaatttttttgtgtgccTCCGTCCAGatacaTGATGGAGATGGTTTGCCTGAGCAGGTGTGTAGTCGGTGCATCGATGAAATCAAGAGAGCATTTACGTTCAGGGAGTTATGTGAGAAGTCTGATGCCACGCTAAGAGATAAATTAACATCATCGCAAATTGTACAAGACCATGATGGTGCTAATGCTAATCACTCTGAGAACGAACTTGATAACGTAATGAAGACTATAAAACAGGAAAAACAGGAATATGTGAATTGCGGTTTCAAGTTAGAAGTTACCGACTACCTTGTGAATAAGCAAGACGTAGATGCAGCTGAAAGAAGCGTAAGCCACGCTGAagACAGTTATATATTTTGGCTCCAGGGTGACGAGAAGTGCAATAATGATAGCGGGAAAGAAGAGCACAATGGATCCATCGATGATTGTAATCCACTTGATGCAAGGAAACACCAAGAGATTGACGccggaaaaaatattttctcgTGTAATGAATGCAATAGGAGCTACTCACTTTCCCGTGATTTGACTCGACACAGCTGGACACACTCTAATAAAGGAGAAAAACTTTTCGAATGCAATGCATGCGGTAAGAAGTTTTTGCTCAAACGTTATCTTCACCAGCACCAACAGAGAACTTGCAACAATAAAAAGGACTACCTTTGCAAGGTTTGCGGTTCGACTCTCGCCAGTAATAGGAATCTTCAATTGCATCTAAAAAGACATAACAGAGATGCCCCGTCAGTCACACGCAGCGATGATAAAGAAAAATCAACGTCTTTGCAGTGCGCCAATAAAGGAGAAAGACTTTTTGAATGCAATGTATGCCGTAAGAAGTTTTTGCATAAACGTTATCTTCACCAACACCAACGTAGAGTTTGCGAAAAATCTAAATACTTTAACGAAACTAAACAAAACCCTCCAAAAAAGTCCTACCCTTGCAAGGTATGCGGTTTGATTCTCGCCAATAAGAGGAATCTTCAATGCCATCTAATGATACATAACAGAGATGACCCCTCAGTCACACTCAGCGATGATAAAGAAGACCCCTCAGTCACACTCTTTGATGATAAAGAAAAATCAACGTCTTTGCAGTCCGCCAATATAATAGAAACCCTTTTCGAATGCAATAGAATTTGCAATAATCCCAAATACGTCAACAATACTACAGAAAACTTACCTAAATCTAAAAAGTCCTACCTTTGCATTGTATGCGGTAAGACTCTAGCCAATAACAGGAATCTCGAATGGCACCTACTGACACATAGCAGAGATGCCCCCATGGTAGCACACAGCCATGGTAGCTATGatattgaaaaatcaacgtCTACGCAATGCAACATATGTGGCGAGAGTTACTCAGATGTGATCAACCTTATAGCTCACCGAGAAAAACATAGACAAAGTGAAGACCCTCCACTAACTCAAAATGATAACACAGAAAAACCCTTTAAGTGTACAGAATGTGGAAAGGCTTTTACGTTCATGAGGTATTTAAGACAGCACCAATATGTGCACATCAAGCAGGCCAAGACCCTCAAAAAACGTTTCCACTGCAGTGATTGCGGAAAGCGCTTTAGCTATCTGAAATCTCTAAGATCCCATGAACGGCTGGTTCATAAGAAATATGCGAATATCGCTGCTAAAGGACCTCTACCCTGCAACGTATGTGGGATGGAATACAATACCAGTGCCGGCCTTTTGAGGCACTGTGCCATAGCACACGGAATCGCCGACAAAAACTTATCTGTCAAGTCCTTTTTGTGTAACATATGTGGTAAGGCGTTCGCAACCAATTTCAGCTTAAGAACGCACATGCACATACACACTGGCGAGAAGCCGTATAAATGCAGCGTCTGCGATAAACGGTTCACGTCAGACTCGAACCGCAGGGCGCACCTGCGCGTACACACGTTGGAAAAACCTTACCGCTGCAACATATGCAACCAGCGCTTCACCCATTCGGGGGAGCGCAATGTGCATGTGAAAAAGCACTCTGGGGTGAAGTCGCATAAGTGCAAGCTGTGCGGCAAAGCTTACCTGACCGGTCACGGGCTGCTGGGCCACATAAACTCGATACACAGCAACGAACGGCCTTATGTGTGCAAGGAATGTGGCAAGGGCTTCGTCTCCGGTTCAATCCTCAAGGATCACATGACTACGCATTCGGAAGAACGCCCGCATTTGTGCAGTGTGTGTGGAAAGGGTTTCAAACGGGACGATCATCTCAAAACACACATGAAAGTGCACCGGCCAAAGAAATGA
- Protein Sequence
- MSPALENDQICRTCLSESQDMTCVFNKHEMEHAAARVCDLIFLCASVQIHDGDGLPEQVCSRCIDEIKRAFTFRELCEKSDATLRDKLTSSQIVQDHDGANANHSENELDNVMKTIKQEKQEYVNCGFKLEVTDYLVNKQDVDAAERSVSHAEDSYIFWLQGDEKCNNDSGKEEHNGSIDDCNPLDARKHQEIDAGKNIFSCNECNRSYSLSRDLTRHSWTHSNKGEKLFECNACGKKFLLKRYLHQHQQRTCNNKKDYLCKVCGSTLASNRNLQLHLKRHNRDAPSVTRSDDKEKSTSLQCANKGERLFECNVCRKKFLHKRYLHQHQRRVCEKSKYFNETKQNPPKKSYPCKVCGLILANKRNLQCHLMIHNRDDPSVTLSDDKEDPSVTLFDDKEKSTSLQSANIIETLFECNRICNNPKYVNNTTENLPKSKKSYLCIVCGKTLANNRNLEWHLLTHSRDAPMVAHSHGSYDIEKSTSTQCNICGESYSDVINLIAHREKHRQSEDPPLTQNDNTEKPFKCTECGKAFTFMRYLRQHQYVHIKQAKTLKKRFHCSDCGKRFSYLKSLRSHERLVHKKYANIAAKGPLPCNVCGMEYNTSAGLLRHCAIAHGIADKNLSVKSFLCNICGKAFATNFSLRTHMHIHTGEKPYKCSVCDKRFTSDSNRRAHLRVHTLEKPYRCNICNQRFTHSGERNVHVKKHSGVKSHKCKLCGKAYLTGHGLLGHINSIHSNERPYVCKECGKGFVSGSILKDHMTTHSEERPHLCSVCGKGFKRDDHLKTHMKVHRPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -