Opun054892.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638146.1:15658439-15664048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.018 2.9 10.3 5.0 1 23 249 271 249 271 0.91 2 18 5.6e-06 0.00091 21.3 7.0 1 23 277 299 277 299 0.98 3 18 2.2e-07 3.6e-05 25.8 1.8 1 23 305 327 305 327 0.99 4 18 0.019 3.1 10.2 1.9 1 20 333 352 333 354 0.94 5 18 7.3 1.2e+03 2.1 0.1 8 23 526 541 521 541 0.92 6 18 9.2 1.5e+03 1.8 0.4 12 23 588 599 583 599 0.83 7 18 2.7e-05 0.0043 19.2 0.6 1 23 616 638 616 638 0.98 8 18 3.6e-05 0.0059 18.8 1.2 1 23 655 677 655 677 0.96 9 18 0.0077 1.3 11.5 1.8 1 23 686 709 686 709 0.89 10 18 0.0022 0.36 13.2 2.1 1 23 720 743 720 743 0.95 11 18 0.081 13 8.3 1.4 1 23 755 778 755 778 0.97 12 18 0.00054 0.088 15.1 0.1 1 23 789 812 789 812 0.96 13 18 9.4e-05 0.015 17.5 0.2 1 23 824 846 824 846 0.92 14 18 0.00031 0.05 15.9 3.1 1 23 852 874 852 874 0.99 15 18 2e-05 0.0032 19.6 0.9 1 23 880 902 880 902 0.98 16 18 0.057 9.2 8.7 2.4 1 23 908 931 908 931 0.98 17 18 7e-06 0.0011 21.0 0.3 1 23 937 959 937 959 0.98 18 18 2.3e-06 0.00037 22.6 3.3 1 23 965 987 965 987 0.96
Sequence Information
- Coding Sequence
- ATGACCTGTATATTTAGCACACATGAATTTGGACAAGCTGGAACAAGAGTGtgcgattttattttattgtgtgcATCTGTGCAGattCATGAAGGAGACGGTTTACCTGAGCAGGTGTGTACTCGGTGCATCTGCGACATGAAGAGTGCATTCACGTTTAGGAAGTTATGTGAGAAGTCAGATGCCGTGCTACGAGATAAACTGAAGTCAACCCAAAATATAGAGCAGCATCTTAAAACTGAACCTCAAAAGAACTCCGAGAATGAATCTGATGGTGTAACAAACCATATAAAACTTGAATTTGTGGATGATACATTTTATGCAGAAGTTACGAGCTCCAAGGAGACCATCCCAGTTGTTGATCCAATAGAaaCTCTCGAGAACGTGATTGACTACAATACAAGTTTAAACGATACAATCTCTGAATACAACAGTGATAATAAGgatgaagatgaagatgtcAGTAGTTATGGGGACGATAATCTTGTGAAAGTTGAGCACGGTGTATCTACCGATGATCGTGACCCACTAGGCGAAAGGATGGACTCAGAGTCTGGATATGCAGGCAAGGTGGAGCAAAATTTGTGTGTGACAGAGGACGTGAAGCCCCAAATCTCCAAGCCAGTGGCCCTCCAGTACTTGCTGTGCAGAGTGATCTCCCCGAACCGGGCGGACAGCATCAGTGTGCCGCAGCAGCAGCACTCGCCATCCAAGAAGGCCAAGGCGAAAGTGGACCCCAAGGTGTTTGAGTGCGAGGTGTGCAAGAAGACGTTCACTAGACGCCTCTACCTCTACCAGCACTGCAAGCTGCACACCGGCATCCGCGAGTTCACCTGCGAGCACTGCAACAAGTCGTTCAGGCGCAAGGAGCACCTCCTGCGGCACAGGATGTTGCACAGCGGTGTCAAGAACTTCACCTGCAACATATGTGAGAAGGCATTCTCCAGGAACGACAACCTGCTCAAGCACAAGAAGACACACGGCAGGGAGAGGAACTTCACGTGCAAGATATGCCAGATGCAGTTCGTGATGAAGCACCACTATGAGGCACACAAGATTCGCGATGGAGATGGTTTACCTGTCCAGGTGTGTCCTGTGTGCATTGATGAGATGAAGAAAGCATTTGCCTTCAGGAGGTTATGCGAGAAGTCTGATGCCGTGCTAAGAGATACATCAACTCCATCGCACAATGTACAAGACCATATTGAGGCAAAAACAGCAATTTACTCCGAGAGTAAACTTAAGGACGCAATGAAGACTATAAAACAGGAATATGTGAATTGCGATTTTAAGGTAGAAATTACCGACTTCAACGTTACCATGCAACATTTAGATTCAACAGAAAGTAATACAAATCTTAACGAAGCACACCGTAGAGGGTCTGACAATAATACAAGTTTAAGCAATCAAATTGAAAAGTGTACCACAGAAAATAAGGGTGAAGAGGAAATTAGCATTAATAGTTATATGGATGATGAACACAATGAGTCTGTTGATGATTATGACCCACTTGAAGAAagcaTTGGCGAAGAAATTCAAGTTGAAAAGAAAACTTCCTCATGTGATGTGTACAGTAGAAGCTACCCACAGTTATCTACCCTGAAATACCACTCACTCACTCACATCTTCTACACAGAAAATCCTTTGGAATGCGATGTATGTTGTAAGAAGTTCTTAAATAAACGCCATCTTCACTTGCACCAGCAGAGAATTTGCCGTTCAGCCAGATATATCAACAAAAGAAAATCGAAGAATTTCTTAAGTAACAAGAATCTTCAGTGGCATCTGGCAAGACATAACAGAGATGCGTCCTCACTTACACAAAACGATGTAGAAAAATCAACTTTCAAATGCAGTGTGTGTGGTGAAAGTTATTCCGACTTGGGTAGTTTTAATGATCACCAAAAGAATCATGCTAGTGAAGTCCGCAAACAAAGCGGAGTAGATGATGCAGCAAAGCCTTTCATGTGTGAAGAGTGCGGAAAGACTTTTGCAGTCAAAAGGTACCTTAAAACCCATAAATATGTACACATCAGGCATAACGAAGGAAAACCGTTCGAATGCATTGAGTGTGGGAAGCACTTTACAAATATGAGGAATCTGAAGTATCACGAAGTCAAGCTACACAACACAGTCAGAAATGATAGTGAGGGACGTTTCCTGTGCAGCACTTGCGGGTTAAAGTATAACTCCAGTAGGAGCCTTCAGGATCACCACAACACGGCACATGGCAATACCAATGAAAACCTGTCCGCCAAACCCTTTTCGTGCAGTGTTTGTGCAAACTACTTTATAAACAGGACAGCTCTGAAGTATCACGAACGGAAGTTCCACAACATAGTCGCAAAAGTCAGCGAGGGACCTTTTCCGTGTAGTATATGCGGGTTGGAGTATAACTCTAGCAGCAGTGTATTGAAGCACCAGAACTTGGCACACAGCAGCACCGGTGAGAACAAATCCGTTAAACGCTACCTCTGTAATATATGCGGCAAGGGTTTCACCACCAATGGCGGTCTAAAACTGCACAATTACGTGCACACGGGGGAGAAGCCGTACAAATGCGAAGTTTGCGACAAACAATTTACGTGCCTATCAAATCGCAAGGCGCACATGCGGGTGCACACCTACGAGAAGCCGTACAAGTGCCACATATGCGACAAGAGCTTCGGGCAACCGGGAGAACGGAACGTGCATGTGAGGCAGCACTCGGGCGTGAAACTGTACAAGTGCAAGCTGTGCGAAAATCAGTACACCACTGGCCACGCTCTGCTGGCCCATAAGCGGTCGAAGCACACCAACGAAAGGCCTTTCGTTTGCAAGGAATGCGGCAAGGGTTTCGTTAACGGCTCAATGCTCAATGATCATACGAAGACGCATTCAGGGGAACGGCCACATGCGTGTGGTGTTTGCGGAAGGGGCTTCAAGCGGAGCTACCATCTGAAAACGCACATGAAAGTGCATGAaccgaaaatttaa
- Protein Sequence
- MTCIFSTHEFGQAGTRVCDFILLCASVQIHEGDGLPEQVCTRCICDMKSAFTFRKLCEKSDAVLRDKLKSTQNIEQHLKTEPQKNSENESDGVTNHIKLEFVDDTFYAEVTSSKETIPVVDPIETLENVIDYNTSLNDTISEYNSDNKDEDEDVSSYGDDNLVKVEHGVSTDDRDPLGERMDSESGYAGKVEQNLCVTEDVKPQISKPVALQYLLCRVISPNRADSISVPQQQHSPSKKAKAKVDPKVFECEVCKKTFTRRLYLYQHCKLHTGIREFTCEHCNKSFRRKEHLLRHRMLHSGVKNFTCNICEKAFSRNDNLLKHKKTHGRERNFTCKICQMQFVMKHHYEAHKIRDGDGLPVQVCPVCIDEMKKAFAFRRLCEKSDAVLRDTSTPSHNVQDHIEAKTAIYSESKLKDAMKTIKQEYVNCDFKVEITDFNVTMQHLDSTESNTNLNEAHRRGSDNNTSLSNQIEKCTTENKGEEEISINSYMDDEHNESVDDYDPLEESIGEEIQVEKKTSSCDVYSRSYPQLSTLKYHSLTHIFYTENPLECDVCCKKFLNKRHLHLHQQRICRSARYINKRKSKNFLSNKNLQWHLARHNRDASSLTQNDVEKSTFKCSVCGESYSDLGSFNDHQKNHASEVRKQSGVDDAAKPFMCEECGKTFAVKRYLKTHKYVHIRHNEGKPFECIECGKHFTNMRNLKYHEVKLHNTVRNDSEGRFLCSTCGLKYNSSRSLQDHHNTAHGNTNENLSAKPFSCSVCANYFINRTALKYHERKFHNIVAKVSEGPFPCSICGLEYNSSSSVLKHQNLAHSSTGENKSVKRYLCNICGKGFTTNGGLKLHNYVHTGEKPYKCEVCDKQFTCLSNRKAHMRVHTYEKPYKCHICDKSFGQPGERNVHVRQHSGVKLYKCKLCENQYTTGHALLAHKRSKHTNERPFVCKECGKGFVNGSMLNDHTKTHSGERPHACGVCGRGFKRSYHLKTHMKVHEPKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -