Opun034303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Othius punctulatus
Gene Symbol
-
Assembly
GCA_951805005.1
Location
OX638142.1:48860024-48861959[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.3e-07 2.2e-05 26.4 1.6 1 23 259 281 259 281 0.99
2 12 3.5e-06 0.00057 22.0 7.2 1 23 287 309 287 309 0.98
3 12 5.1e-06 0.00084 21.5 0.8 1 23 315 337 315 337 0.99
4 12 0.045 7.3 9.1 3.2 1 23 343 365 343 365 0.95
5 12 0.00048 0.078 15.3 1.2 1 23 371 393 371 393 0.98
6 12 2.6e-08 4.2e-06 28.7 3.6 1 23 399 421 399 421 0.99
7 12 2.8e-06 0.00045 22.3 1.5 2 23 427 448 426 448 0.96
8 12 1.8e-06 0.00029 22.9 2.8 1 23 454 476 454 476 0.99
9 12 3.7e-06 0.0006 21.9 0.7 1 23 481 503 481 503 0.97
10 12 8.2e-06 0.0013 20.8 4.1 2 23 510 531 509 531 0.98
11 12 5.9e-08 9.6e-06 27.6 1.8 1 23 537 559 537 559 0.99
12 12 6.3e-06 0.001 21.2 1.4 1 23 565 587 565 587 0.98

Sequence Information

Coding Sequence
ATGTCAAAtcaaataatattcaatgaaagaACAAGCCCAAATGCCCTCACAATGGATAATATGTTTCATGTCGCTGATTGTTGCCGTGCATGTCTACGAATTGAATGTTCCCTAACACCAACAAGTAGTCTAGACAATGATTCTATTAAGTTTTGTGACAAATTAATTGCTTGTGTTACAGAAGTTGCTTGGTTAAAAGAAGGACTGCCTTCATTGATATGCTCGACATGCATAGATCGTTTAAGGGCAGCATACGATTTTCGAAATATATGTATGCAATCCGATCATACCCTTTTGAGATACATTAGCCACTTACATGAAGACACAAAGCAAAATATATCCGAACGGCCTCTGATGACCCCGACAAAATTCGAATTTGCGATTCCTGTAACTACCCCAGAAAATAATGGAGAAATAATTGAGGAACCACAAAATGCTGAATATTTACACTTAAAGCACTTTTTAGATAATGAAGAAGATTTAACAAAAACCGATATAGTGGAGGCAGAAGCGTCTGAAGACACAACACCTGATGATAATCCTTTTCTAAACGAACATACGACTCAACCCAATATAATCCAAATGCAAGAAATTCAGCCTTTGTATGAACCGATGCCAACGGCACCCGCTCAGCCTCAACAAGAAATGCCGCAACAAATGGTTTCTCAAATAACAACAACTCCGACTAGAAAAGTGCTCAAGAGAACTACAGGCGTTCAAGTACGTCCTCCAACACCAAATTCTACAGATGTATGTGGTGCCGATATAAAACCATTCACATGTACACTTTGTGGAAAGAATTATCGTAAAAATGCCAACTTACGCATTCATATGAGGACGCACACCGGCGAAAAACCGTTCGAGTGCAAATATTGCGAGAAACGCTTCTATCACTCTTCACATTTGAGGGAACATATTCGTAGGCACACTGGTGAGAAACCATTTCAGTGTGCTGTATGCAATAAAAGATTTACTATAAAAGGTGAACTTACAATGCACATGAAGTCACATACAGGTGAAAAACCTTATGCTTGCACATGCTGTGATAGACGCTGTTTAACGGCAGCCGATTTGAAAGTGCATATGAGGACACATACTGGCGAAAAACCTTTTAGCTGTATGACTTGTGGCAAAAAATTTGCTAGtacttatattttaaattctcATATTAAAACACATACTGGGGAAAGACCTTATTCTTGTACCATATGTGAAAAAACTTTCACTCAGTCTTCTCATTTAAACGTACACATGCGAAAACATACTGGTGAGAAAGTGAGCTGTAAAATGTGTGACGCAAAATTTACTCATTCATCTCAATTAACCGTTCACATGAGAGCACACACAGGAAAACAGCCGTATAAGTGTACAATGTGTGACAAAGTGTGTAATTATGCTTCCGAGTTACAAACTCACATGATGAAACATACCGGTGAAAAATTCGCCTGTGTTACTTgtgataaaaaatttacaactgcAGCGTATCTGCAAGAGCACACACGTACGCATACAGGAGAGAACCTATCTACTTGCACGATTTGTGAAAGACAGTTTACAAGGCATCAATATTTAGAAAAGCATATGAGGACACATACAGGTGAAAAGCCATATACATGTTTCACCTGTGGTAAGAAATTTACTCAGTCCTCATCACTCAAAGTTCACATACGTATTCATACTGGTGAAAAACCTTACTCATGTTCTATTTGTGAACGCAGGTTTACTACTTCATCTGATCTATCAGCTCATAATAAGAAACATAAGAAGTATATAAATTTGTAA
Protein Sequence
MSNQIIFNERTSPNALTMDNMFHVADCCRACLRIECSLTPTSSLDNDSIKFCDKLIACVTEVAWLKEGLPSLICSTCIDRLRAAYDFRNICMQSDHTLLRYISHLHEDTKQNISERPLMTPTKFEFAIPVTTPENNGEIIEEPQNAEYLHLKHFLDNEEDLTKTDIVEAEASEDTTPDDNPFLNEHTTQPNIIQMQEIQPLYEPMPTAPAQPQQEMPQQMVSQITTTPTRKVLKRTTGVQVRPPTPNSTDVCGADIKPFTCTLCGKNYRKNANLRIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTAADLKVHMRTHTGEKPFSCMTCGKKFASTYILNSHIKTHTGERPYSCTICEKTFTQSSHLNVHMRKHTGEKVSCKMCDAKFTHSSQLTVHMRAHTGKQPYKCTMCDKVCNYASELQTHMMKHTGEKFACVTCDKKFTTAAYLQEHTRTHTGENLSTCTICERQFTRHQYLEKHMRTHTGEKPYTCFTCGKKFTQSSSLKVHIRIHTGEKPYSCSICERRFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466620;
90% Identity
-
80% Identity
-