Opun021633.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Othius punctulatus
Gene Symbol
-
Assembly
GCA_951805005.1
Location
OX638140.1:54101039-54104730[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.35 58 6.2 5.7 2 23 150 171 149 171 0.95
2 16 2.6e-05 0.0042 19.3 3.6 1 23 176 198 176 198 0.98
3 16 0.00014 0.023 16.9 5.0 1 23 204 226 204 226 0.97
4 16 0.00028 0.045 16.0 0.7 1 21 232 252 232 253 0.93
5 16 3.8e-05 0.0062 18.7 1.3 1 23 260 282 260 282 0.96
6 16 8.1e-05 0.013 17.7 0.1 1 23 445 467 445 467 0.96
7 16 1.6e-05 0.0026 19.9 6.4 1 23 473 495 473 495 0.98
8 16 3.9e-05 0.0063 18.7 5.3 1 23 501 523 501 523 0.97
9 16 5.9e-06 0.00095 21.3 1.4 1 23 529 552 529 552 0.96
10 16 0.072 12 8.4 3.0 1 23 564 586 564 586 0.98
11 16 6.5e-05 0.011 18.0 5.4 1 23 592 614 592 614 0.98
12 16 2.5e-06 0.00041 22.4 0.5 1 23 621 643 621 643 0.96
13 16 3.2e-06 0.00052 22.1 1.2 1 23 649 671 649 671 0.98
14 16 1.6e-06 0.00026 23.0 0.5 3 23 679 699 677 699 0.96
15 16 2.3e-05 0.0038 19.4 0.1 1 23 705 727 705 727 0.99
16 16 0.031 5 9.6 0.4 1 23 732 755 732 755 0.97

Sequence Information

Coding Sequence
ATGGATCCGGGACAGCTGGATTTCGCCCGGATCTGCAGGGCATGCAAGTGTGAATCTGAAGAGATGCGTGACCTCTTCAGCGTGATGAACAGCGAAGCCGAGAGTCCCCGCATTGACGAGATGCTAATGGCGTGCACATCCGTGCAGATATCCAATGATGATGATCTTCCACACCTAATATGCGAAAAGTGCATTACCAAACTGGAGTAttcattcattttcaaacaacaGTGTGAGGCTGTAGATGTTAGTTTGCGTGATTACGCAGCTGCGTTAAATAAACAATCAGACATAGAATTTGAAGACAAACTTCTAGACGATTTGCAGCAAATGATTGACTATAAGCCCCATACAGATTCAGAGAACATCAAGGTAGAAACTGACGAAAGCAAGATTCAATCGAAGTGTGATTTCATCGAGATTCTGGACAGCAGTCAATTGATACTTACTTGTAGGCATTGCTTTAAAGTGTTCACTACAGTCGATGGTCTAAAGTGTCATAAGAGGCTTCACACTGGTGCTCTGTATAAATGCAAATTGTGTGATAAAGAGTACACACGGTTGAATCACTTGCAGAGGCATGAGTTGTCACATGGGAAGAGAAAAATGCATGTTTGCAAGATCTGTAACAAAACTCTCACACGCTTTGAACATCTAAAACGTCACTTGGTCACCCATTTGAAAGAGAAACCGTTTGCGTGCGTTAAATGTAACCGTGGGTTTAACCGATCTGAACATTTATTGAATCACATGGACAAGTGTAAGGGTGATCGCATtcatatttgtgatatttgtaATAAAGGTTTTAATAGGGCAGATAGTTTGGAAGTACATAGACATATACATGATAACAAAATGCCAGTTTTGCCTACACTTGAAAATTTAGATAATATTGAGGAACATTACATAGAAATTGATTATGATGAATCAAACAATTCATTTTTTGATGACGATGATGATGGTGCTCTAGATTTGGATGATACTGATTGTTTTGAACCTCAAGTAAGTATAACTGAAAGTACAGCAACAAACGAATCAGAAAAAAATGACATAGAAGAGTCGGTAGAATCTGAAGACAAAGATGATGTTAAAGATGcaattaaaaatgaagaaatagcaGCAATCACCGAACCAGTTGAGAATCTGGATACTATAGATTATTATGAACATGATTCAGATAGTGGACACTCCGAGTACACCCCAACAAAAGTAACGCCAAAGGTTAAGAGAGGCAGAGGGCGACCTCGTAAATATGGAAAGCGAGGGAGACCTCCAACTAGATTTAAACAAGCTATCAAAGAGGAGTACGACGAATTTGAGGAGGAGGGTGTGTTCCCGTGTCCCATTTGTAatgaaatgtttaataaaatgagCTTGCTTGAGAAACATGCTATGCAGCATGAAGGTGCAAAAGTTTTCGAGTGTAAAACTTGCAGCAAATCTTTCTCCAGGTCGACCCACTTAAAGCGGCACTTTATGTCTCATTCGGAGGTAAAACCCTATTGCTGCGATATATGCACCAAGGGCTTTAACCGCCGCGACCACCTTAGTCAGCACATGAAACTCCATTCACGGGCTCAGGAATATGAGTGTGAGATCTGTAAGCGGCCTTTTTCACGTGCTGATCACCTAGCGAAACACAAATTATCAAAACATAATTTGGGCGATAGGATCCGGGGCGAGAAGAAGTTTAAATGTCACGTTTGCATGAAAGGTTTCACCACGGAGAAGTACAGGGATATTCATATGAAATGGCATACTGGAGAGAAGTCATTCCAGTGCAAGACTTGTGATAAGTCTTTCCTGTCAAAGTCACACCTTACAGAACACATGAAGTTCCATAATGACAATTCAAAAAAGTTTTTGTGCTCAGAGTGCGGTCAGAGATTTATTAGAAATGATTATTTAGTTATACACATGAGGAGGCATCGGGGGGAGAAACCATTTAAGTGCAAGTATTGCGGCAAAGGTTTTCCCAGGACTACTGATCTCACTGTTCATGAACGGTACCACACAGGTGAAAAAACACACCTCTGCGTTATCTGCGGACGTGGTTTTGGAAGAGCTTATAACTTAACTGTTCATATGAGAACACATACTGGTGAGAAACCTTATCAATGTACCTACTGTGATGCTGCATTTGCGCAGGGAAATGATTTAAAAGCGCATGTGCGACGACACACTGGGGAAAGATTCCAGTGTGACTTATGTCCAGAAACATTTTTGATGGGATATTTATTAACGCAACATAAGAGAACAGTACATGGTTTAAATGTTGTGAGCAACATAAGAAGGCTTCAACCAACGACTAAAGTCTGTGAAGATGACCCACCACCTATCACCATTTCATTGCCGCCGCCAATTGTGCCCTCTTCAATTCTCAATGCACAACTACACGCCCAGATAGCAATGGCACATCTGCATCAACAAACCGTTCAAGAATGA
Protein Sequence
MDPGQLDFARICRACKCESEEMRDLFSVMNSEAESPRIDEMLMACTSVQISNDDDLPHLICEKCITKLEYSFIFKQQCEAVDVSLRDYAAALNKQSDIEFEDKLLDDLQQMIDYKPHTDSENIKVETDESKIQSKCDFIEILDSSQLILTCRHCFKVFTTVDGLKCHKRLHTGALYKCKLCDKEYTRLNHLQRHELSHGKRKMHVCKICNKTLTRFEHLKRHLVTHLKEKPFACVKCNRGFNRSEHLLNHMDKCKGDRIHICDICNKGFNRADSLEVHRHIHDNKMPVLPTLENLDNIEEHYIEIDYDESNNSFFDDDDDGALDLDDTDCFEPQVSITESTATNESEKNDIEESVESEDKDDVKDAIKNEEIAAITEPVENLDTIDYYEHDSDSGHSEYTPTKVTPKVKRGRGRPRKYGKRGRPPTRFKQAIKEEYDEFEEEGVFPCPICNEMFNKMSLLEKHAMQHEGAKVFECKTCSKSFSRSTHLKRHFMSHSEVKPYCCDICTKGFNRRDHLSQHMKLHSRAQEYECEICKRPFSRADHLAKHKLSKHNLGDRIRGEKKFKCHVCMKGFTTEKYRDIHMKWHTGEKSFQCKTCDKSFLSKSHLTEHMKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDLCPETFLMGYLLTQHKRTVHGLNVVSNIRRLQPTTKVCEDDPPPITISLPPPIVPSSILNAQLHAQIAMAHLHQQTVQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-