Opun023479.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Othius punctulatus
Gene Symbol
-
Assembly
GCA_951805005.1
Location
OX638140.1:84648102-84651726[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00019 0.031 16.5 1.2 1 23 132 154 132 154 0.98
2 15 0.00028 0.045 16.0 0.7 1 23 159 181 159 181 0.96
3 15 9.1e-05 0.015 17.5 1.1 1 23 213 235 213 235 0.99
4 15 3.7e-06 0.0006 21.9 2.6 3 23 243 264 241 264 0.97
5 15 0.00019 0.031 16.5 4.4 2 23 283 305 282 305 0.97
6 15 0.0017 0.28 13.5 7.3 1 23 364 386 364 386 0.97
7 15 0.00031 0.05 15.9 1.3 1 23 392 415 392 415 0.94
8 15 1.5e-06 0.00024 23.1 2.3 1 23 420 442 420 442 0.99
9 15 0.00012 0.019 17.2 0.8 2 23 453 474 452 474 0.97
10 15 6.4e-08 1e-05 27.5 1.4 1 23 481 503 481 503 0.98
11 15 2.1e-06 0.00034 22.7 1.6 3 23 515 535 513 535 0.96
12 15 0.00018 0.03 16.6 5.1 1 23 541 563 541 563 0.99
13 15 1.2e-05 0.002 20.3 1.8 1 23 569 591 569 591 0.96
14 15 7.5e-08 1.2e-05 27.2 0.2 1 23 597 619 597 619 0.99
15 15 0.00029 0.048 15.9 0.1 1 23 625 649 625 649 0.92

Sequence Information

Coding Sequence
ATGTTGAGAGAGGATATTAAGGTGGATATGGAGAAAGTATGCCGATCGTGTTTACGTGAGAATGAAAAGATGCGAAATCTCTTTgataatagaaaaaatgaagATACCCAATCCCTTCAATTGGCGGAAATGATTATGGCATGCACTTCTGTGCAGGTACACAATGGTGACAGTCTTCCTAAATTATTATGTGATGaatgtgaaataaaattaatagttgCCTAcgattttaaattgttatgtgAGAAAAGTGATTACACATTAAGAGAAATTGAGCAGGAAAAAAATGGTGGGAATATTTATGATGACGGGGATCATCACTTCATGGAAAATTCCCAGTCGATTGATTATGACAGTGAAGAGAAGAAGACGAGCGACGATGAAGATCACAGTTTTAAGTGTTTATCGTGTCCGAAAATGTTTGGATCTCAGAAAGGGTTACGGCTGCACCAGAAATCACACAAGGGTTCGAAGCACATGTGCAATGAATGTGGAGTCGGATTTGTCAAGGCTGTTCAACTGAATAAACACAAAAAGCTGCACAAATCAGAGCTGGATGCTGTTAAACACGAAGACGCAAGCTTGATGGAAGATTATGAATACCAAAGTGTAAGTGGTGATAAAAAAGATCGGCAGTACGAATGCGAAGTGTGTCACAAAATCTTAACAACCTATGTTGGATTAAAAATTCATATGAAGAGACATACCGGGGTCAATTTGTATGGTTGCAATGTCTGCGAAAAAACTTTCACCAAAAGTAGCCATGTAAAAAGGCACATGAGATCGGGTCACGGGTTAGAATATAATGGTCAACAACACGAGAAATCATTGGTGAAGaagGTAATGGAATGTGAATTTTGTGATCGTAAATTCAAGTACAGGAAAAGTTTCAATCACCATATGCAAACGGAGCATGGAATGGAAGAAAACGATAGCGATACCCCTCTAAGTAAGTTGATGAAAAGCCCGGAACATCACAGCTTGGAACCCAAAATCGAAATTGATGTTGATGACGAAGGTTTAGAAGTTTATAATATGGAGGATCCCGATAATCCTGACGACTTGGAAACTAAAGAGCCTAGGCGGGCCCACACCTGCCATGTCTGCGAGTCACAGTTTTCAAGGAGCAACCATTTAACGAGGCATATGACGCTGCATAGGGCTGTGCTCACCCACAAGTGTGATTTATGCGATAAGGCATTTGCCTCGCAAGACTTTCTCGATAAGCACAAACAGGAGGATCATATTAACAAGCCTTACACGTGTACGATATGCAATAGAACGTTTACCAGAGGTGAACACCTCATACGACATTTAAAAGTCCATTTGCCAAACGAAAAGAGTGCTAACACTTTAAAATGCTCTGTGTGTATGAAAGAATACTCCAGGGCAGACCATTTAGCTAGGCACATTAAAGTTCATCTACAACATGATAAAAGACATGTTTGTAATGAATGCGGTAAAGCATTCAACAGGTTGGATAACCTAAAAACGCATCAAAGAATCCACACCGGTCAAAAAGATATTTCTAAATTACACTTGTGTGTGTACTGCGGGAAGGAATTTAATAACTCTAGTAATATGATTGTACATATGAGGCGCCATACAGGTGAACGTCCGTACAAATGCAACCAATGTGGCAAAGGTTTCCCGCGATCCCATGACCTGAAATGCCACGAAAGAACTCATTCGGGTGAAAAGCCATATTTGTGCACGTTATGTGGAAAATCGTTTAACAAAAGCAATAAATTGCTCAGACACACAAGAGTTCACACTGGAGAACGTCCTTACGTTTGTAACATATGCGGAAGAGCTTTTACACAGTCAAATGATCTTGCTTTGCATATGAGACGGCACACCGGTTCACGACCGTACGCTTGCGGTGTCTGCCCGGCTAGATTCATTCAGTCGGGTCAATTGAAGACGCACAGAAGATCTTCGGGGCATTGGATGGACACACAGCCTGACCTTAAGGGCGGTCATAGAGTTGAGCCGGTAGTTTTACTGACAGAACCAGcaccaattaaatttaaaacacacgGCAAAACTAAACACGGAGGCGATGATGACTCTCCGAAAGAGGACGGGAAACCGGAAGCCGACAGCTTAGTACCGAAACCGATTGCTGTCGGATACGTGCCTAGTCAAGATGAACGCTTGCGACCACTTCTCGTCGACACCAACAAGATTTTAGCACAATTTCCGCACTTAAATAGCTTTACAACTGCTGTGAATAGTAATTTTGTAATCCATGCAGATGCCTCTAGAAATACGGAAGAAGAAGGAAAGGTGAAACTCGTTTCAAATGCTCCAACATTCCAGGTATACACGTCTACTTCAACCACCAGTACCTTTACAAACACTGAATCATTTAATTATCAGACATATGGataa
Protein Sequence
MLREDIKVDMEKVCRSCLRENEKMRNLFDNRKNEDTQSLQLAEMIMACTSVQVHNGDSLPKLLCDECEIKLIVAYDFKLLCEKSDYTLREIEQEKNGGNIYDDGDHHFMENSQSIDYDSEEKKTSDDEDHSFKCLSCPKMFGSQKGLRLHQKSHKGSKHMCNECGVGFVKAVQLNKHKKLHKSELDAVKHEDASLMEDYEYQSVSGDKKDRQYECEVCHKILTTYVGLKIHMKRHTGVNLYGCNVCEKTFTKSSHVKRHMRSGHGLEYNGQQHEKSLVKKVMECEFCDRKFKYRKSFNHHMQTEHGMEENDSDTPLSKLMKSPEHHSLEPKIEIDVDDEGLEVYNMEDPDNPDDLETKEPRRAHTCHVCESQFSRSNHLTRHMTLHRAVLTHKCDLCDKAFASQDFLDKHKQEDHINKPYTCTICNRTFTRGEHLIRHLKVHLPNEKSANTLKCSVCMKEYSRADHLARHIKVHLQHDKRHVCNECGKAFNRLDNLKTHQRIHTGQKDISKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKTHRRSSGHWMDTQPDLKGGHRVEPVVLLTEPAPIKFKTHGKTKHGGDDDSPKEDGKPEADSLVPKPIAVGYVPSQDERLRPLLVDTNKILAQFPHLNSFTTAVNSNFVIHADASRNTEEEGKVKLVSNAPTFQVYTSTSTTSTFTNTESFNYQTYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-