Opun000110.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- CATORJ010000308.1:104471-111160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8e-05 0.0062 18.7 0.4 1 23 115 138 115 138 0.98 2 20 5.6e-06 0.00092 21.3 1.5 1 21 158 178 158 179 0.95 3 20 0.00028 0.045 16.0 1.0 1 21 201 221 201 222 0.97 4 20 6.6e-06 0.0011 21.1 0.4 1 23 244 267 244 267 0.98 5 20 3.4e-06 0.00054 22.0 0.9 1 23 289 312 289 312 0.98 6 20 0.0007 0.11 14.7 1.9 1 23 334 357 334 357 0.98 7 20 0.0002 0.032 16.5 0.1 1 23 363 385 363 385 0.98 8 20 0.00073 0.12 14.7 1.3 1 23 391 413 391 413 0.98 9 20 1.8e-05 0.0029 19.8 4.2 1 23 419 441 419 441 0.98 10 20 3.4e-05 0.0055 18.9 2.0 1 23 449 471 449 471 0.98 11 20 0.0032 0.51 12.7 2.0 1 23 477 499 477 499 0.97 12 20 0.24 39 6.8 0.2 3 23 565 586 563 586 0.96 13 20 2.5e-05 0.0041 19.3 3.8 1 23 608 630 608 630 0.98 14 20 0.00018 0.029 16.6 1.1 1 23 637 659 637 659 0.99 15 20 0.012 1.9 10.9 7.6 1 23 665 687 665 687 0.98 16 20 0.014 2.3 10.6 0.5 1 23 693 715 693 715 0.98 17 20 9.9e-06 0.0016 20.6 3.1 1 23 721 743 721 743 0.95 18 20 0.0014 0.23 13.8 0.7 1 23 749 771 749 771 0.98 19 20 6.7e-06 0.0011 21.1 1.4 1 23 777 799 777 799 0.98 20 20 0.00057 0.093 15.0 2.0 1 23 805 827 805 827 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCCATTAGTTCTGAATGTGGCATAGATGGTTTGATGGATGCAGCAGTTCAGGTTAAAACTGAAGAATGCTCTTTCGAGGAGGAGAATGGAGACCTGTTGAATGCAGCTGGTACAAGACTGGCTGAAACACTTTCTGAAGACCATTCGCGTTCAGTGACAACAATGTCTGCAGAGAAGACCCGTGAAAGTCAACTGGCAAATCAAGCATGTACTTTTATAATTGCACCGAGTGCTGTCACCAATTGGGCAATAATCTACAAAATTACGCCCCTGAGCTTTGCCCTGAATCGTGATATCAAGACGCGAAAGATCGCCCCCAAAGAGCAGCCTTCATTTTACAAATGCAATAAATGCGTCTTAACGTTTGCCCAAAAAGGAGATTTGACGACGCACGTGAATATGGTGCACTGCTTTTCCCCGAATCACGATTTCAAGACGCATGAGGTGACCCCCAAAAAGCAGATTTACAAATGTACGAAATGCAACTTAACGTTTACCCGAAAAGGAGATTTGACGAAGCACACGAAAATCTGCTCCGCCCTGAATCACGGTTTCAAGTCGCATGAGGTGACCCCCAAAGAGCAGCCTTCGATTTACAAATGTGTGAAATGCAACATAAAGTTGACCCGAAAAGGAGATTTGACTAAGCACATGAAATTCTGCTCTCCCCCAAATCGCGACTTCAAGACGCATGAGGTGACCCCCAAAGAGCAGCCTCCGatgtacaaatgtacaatatgCAACTTAACGTTGACCCGAGAAGGAGAATTGACCAAGCACATGAAAGTGGTGCACAGCTCTGCTCTGAATTACGATTTCAAGACGCATGAGATGACCCCCAAAACTCAACCTTCgatttacaaatgtatgaaatgCAACTTAGCGTATGCCCGAAAAGGAGATTTGACCAAGCACATGAGAAGGGTGCACAGCTTTGCCCTGAGTCATGATTTCAAGACGCATGAGATGACCCCCAAAGAGCAGTCTTCGATTTACAAATGTAAGAAATGCATCTCAATGTTTTTCCAAAAAGGAGATTTGACTAGGCACATGAATACGGTACACAGAGCAAGGAAGTATTACACATGTGATGTGTGCGAATCAAGCTTTGCCGGAGAGAATGATTTGAGGAGGCACATGTTAATCCACTCTGGAAAGAGGCGGTTCAAATGCGATTTATGCACCTCTCGCTTCACCCTGAAAGGTGATTTGAAGAGGCACACACTGATCCACATCCTGGAGAAGCCCCACAAATGTGACTTGTGCCCCTCAAGTTTCTCTGATAGAAGTAATTTGAGAAGGCACAAGAAACGACACATCGCATCCATGTCGGAGCGTCACAAGTGTACCGTATGCACAACAAGCTTCGCTCTGAAGAGAAATTTGATTAAGCACATGTTGATACACACTGACGAGAAACCTTAccagtgtgatgaatgcacctcgaTGTTTGCCCTGAAAAACGATCTGAAGAGGCACAAAAAGTTCCACGCTGGACATCTGCTCCACAATTATGATGTGAGCTCCACAAGCTCCTTCGGAGAAGAGGAGCAGACAACTGCATCTAATTATAAAACTAACGGAGTCTTGGCCGGACAAATTGCACCAGAGCAAAATGCTTGTGAAATAAAAGTAGAGGAAGAGGAGCAAGAATCAGTGGAGATTGATCCTATTTTACCATATGGTTGCCTCCAGTGTAATACTACGTATGACGGCTTGGCAAGCTATGAAATGCACATACAGACCAGACATAGTAGTGACgtcaaaaatagtaaaatgcAAACGAGCAATGCAAATCGGATCACTATGTTGGTGTTCACCTGTAAGGTTTGCCACTCAAGCTTCACGCAAAAGTCTGCATTGAAGAAGCACGAGATGATGCACGGCAGAAAGAAgaggccttacaaatgtgacggaTGTGCCTCAAGCTTTTCCAcggaaaattatttgaataagcATAGGTTGACTCATACCAGCCAGAAACCTCACCAATGTGATGAATGTTCCTCAAGGTTCGTCACAAAATGTCTATTAAAGAAGCATAAAAGAAAGCACATGAAACACAGGCCGTTTAAATGTGATGTTTGCATCTCGGGGTTCTTCCAAAAGGCCAACTTGGACAGGCACGCAAGGACCCACATAGCAGAGAAACCTTTTAAATGTAAAGTGTGTCATACAAGATTCTCGACGCAAgtgaatttgaaaaagcacTTGGTAGCGCACTCCGGAGAGCAACCGTACAAGTGTGATGTCTGCGCCTCGAGCTTCGCCATGAAACGGGAATTGCGGCGTCACAGGACGGTCCACACCGGGGAGAAGTCTTACGCATGTGAAGTGTGCACCTCCAGCTTCacagataaatataatttgaggAGGCATGAGAGGAGAcataaagaaaagaaaaattacaTATGCAACGTGTGCACATCACACTTTTCCACAATAGGTAATTTGAGAAGGCACAAGATCACCCATACTGGAGGTAATCTTGTATTGTGA
- Protein Sequence
- MGSISSECGIDGLMDAAVQVKTEECSFEEENGDLLNAAGTRLAETLSEDHSRSVTTMSAEKTRESQLANQACTFIIAPSAVTNWAIIYKITPLSFALNRDIKTRKIAPKEQPSFYKCNKCVLTFAQKGDLTTHVNMVHCFSPNHDFKTHEVTPKKQIYKCTKCNLTFTRKGDLTKHTKICSALNHGFKSHEVTPKEQPSIYKCVKCNIKLTRKGDLTKHMKFCSPPNRDFKTHEVTPKEQPPMYKCTICNLTLTREGELTKHMKVVHSSALNYDFKTHEMTPKTQPSIYKCMKCNLAYARKGDLTKHMRRVHSFALSHDFKTHEMTPKEQSSIYKCKKCISMFFQKGDLTRHMNTVHRARKYYTCDVCESSFAGENDLRRHMLIHSGKRRFKCDLCTSRFTLKGDLKRHTLIHILEKPHKCDLCPSSFSDRSNLRRHKKRHIASMSERHKCTVCTTSFALKRNLIKHMLIHTDEKPYQCDECTSMFALKNDLKRHKKFHAGHLLHNYDVSSTSSFGEEEQTTASNYKTNGVLAGQIAPEQNACEIKVEEEEQESVEIDPILPYGCLQCNTTYDGLASYEMHIQTRHSSDVKNSKMQTSNANRITMLVFTCKVCHSSFTQKSALKKHEMMHGRKKRPYKCDGCASSFSTENYLNKHRLTHTSQKPHQCDECSSRFVTKCLLKKHKRKHMKHRPFKCDVCISGFFQKANLDRHARTHIAEKPFKCKVCHTRFSTQVNLKKHLVAHSGEQPYKCDVCASSFAMKRELRRHRTVHTGEKSYACEVCTSSFTDKYNLRRHERRHKEKKNYICNVCTSHFSTIGNLRRHKITHTGGNLVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -