Opun034847.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- -
- Assembly
- GCA_951805005.1
- Location
- OX638142.1:56922224-56924028[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 0.00015 23.2 0.0 4 38 21 55 18 58 0.83 2 2 6.1 6.4e+03 -1.2 0.1 14 19 176 181 170 182 0.84
Sequence Information
- Coding Sequence
- ATGCCAAGTGTGTATAAAAGAAAACTAGGCTCTCGggcttatcaaaattatatccaAGAAACATTGCAACAATATTTAGAAGCAGTTAAAAGTAAAGGAATGACGCAGAGAAAAGCCGCACAAGAGTTTAAAATTCCGCTGCGAactatcattaataaacttaaaggCAATCTACTTGAAAATCCTGGAAGACCCACGATATTTTCCGAGGAAGAAGAAACTGGATTTGTAAACTGTATAGTAGCCTTCAGCACATTTGGGTTCCCACTAGACTCTTTTGATTTGCGCATGATCGTGAAATCATTCTTGACCCGAGAAGGTAAGAGTATCGGGCTTGAAGTCTTTGATGATGATCAAGCTGGCGAAGAACCACAGACATCGGTGAAGAAATGtcgcaaatcaataaatgtggatagtgacttgtcaaatgatgaaataaCTTTGCGGGATTCTTCTGAAGACGAGGATTTTGTGGGATGTATATTAGGAGAAACCGCGAAGGATGATGTAACTGAAATGGCCGGTTCTGGACAAATGAGCATTAAAGACCTTCTTTTATTGCCGGATGTTGTCAAAGAAGTAGGGGAATATGTTCTCTTCCAATATGAAGTCTTAGACAGACTGTGGGGTAGATAA
- Protein Sequence
- MPSVYKRKLGSRAYQNYIQETLQQYLEAVKSKGMTQRKAAQEFKIPLRTIINKLKGNLLENPGRPTIFSEEEETGFVNCIVAFSTFGFPLDSFDLRMIVKSFLTREGKSIGLEVFDDDQAGEEPQTSVKKCRKSINVDSDLSNDEITLRDSSEDEDFVGCILGETAKDDVTEMAGSGQMSIKDLLLLPDVVKEVGEYVLFQYEVLDRLWGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -