Onub030945.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979764.1:2643289-2644608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.8 3.4e+02 2.9 0.2 15 23 3 12 2 12 0.90 2 11 9.5e-05 0.0085 17.4 0.6 2 23 83 104 82 104 0.96 3 11 0.011 1 10.9 0.6 1 21 108 128 108 129 0.94 4 11 0.087 7.8 8.1 0.3 1 23 170 193 170 193 0.96 5 11 0.087 7.8 8.1 0.1 2 23 219 241 218 241 0.95 6 11 0.021 1.9 10.1 0.4 2 23 265 286 264 286 0.93 7 11 7.6e-05 0.0069 17.7 0.0 1 23 290 313 290 313 0.97 8 11 0.073 6.5 8.4 0.2 1 23 317 340 317 340 0.96 9 11 1.6 1.4e+02 4.2 0.7 1 23 345 370 345 370 0.88 10 11 0.043 3.9 9.1 5.8 1 22 379 400 379 402 0.88 11 11 0.011 1 10.9 0.3 1 23 412 435 412 435 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCTCTCAGGAACCACATGAAGACAGACCACACTAATGCAGACTACAACAGCGCCTTCTATAAAGTCGTAGACGACTTGAAAATTGACATTACCGAGTTTAAATGCAATCTGTGTGCTCAAGATATAATACCGAGTGTTGAGACGTTTATGACGCATTTATCTCGGGACCACGGAATAGTAGTTAATTTCGATGTGCCTTTTGGGGTCCTGCCGTACAGACAAGGCCCGACTGGTCATTGGATGTGTCTGGAATGCGACAAATCGTTTACGGAGTTTTCTCAAATAAATAGTCATTTGCGAAgccatgtaaaaatatttacttgtgAGAAATGTGGAGCGACTTTCTTGTCGGAACACGGATTGCGGCAGCACGAACGCAAATTCAAGTGCTACAGAACTTCTTATAAACCTCGATTTGGTAAAGCTCTGAAACATCGTAGCAACACTGAAATCATTCTACAATGCTCCACAGCTTGTCCCTTTAGAACTTGGGGACAGAACTTTAATTGCGTCTTTTGCAGAGTGCAATCAAACGACCCGAATGGTCTCCGAACTCACATGGCCACACGCCACGCCAATTTTGATATTCAGTTAGTGTTCAATAGGAAACTGCGTAAGGAGTTCTTGAAAGTTGATATTACTGATCTTCAATGTAAACTTTGCTTTATGCCGATAGATACCCTCGATGATCTGATCACTCATTTGAAGAACGATCACAAGCAACCAATCAATGCTGACGTTCAACCTGGTGTTCTTCCATTCAAATTGAGTGACGGCACCAATTGGAATTGTGCCATTTGTAAAATACAGTTCATGGACTTCAAATCGTTGAAGAAACACACGGCTGAACACTTCCAGAACTACGTCTGCGATACTTGTGGAGAGGGTTTCATAACTGAAACAGCTCTAATAGCACATACGAAGATACCTCACGGTAATAAATACAGCTGTCCACGCTGTGTCGCTACGTTCTCTACCATTGAAGAGAGGGGTATACATCTTAAAACTCAACATACGACTTTGCCGTATATGTGTATGTACTGTAAAGAAAAGCCTCGTTTCGCAACGTGGGAGTTGCGCAAGCGTCATCTAATGGAGTTCCACAATTATAAGCCTGGTGCAGACATGTATGAGTGTACGACATGTCATATGACGTTTAAGACGCGATCTCAGAAGTACCACCACAATGTGAAGGCGCATCGGATGAGGAAAGAGACAGATTATAACTACCAATGCGGTAGTTGCGCCAGAGGATTCATCTCGAAGCTTTCGCTGGACAAACATATCGCTAAGAAACATTTTCATGTTGGGTAA
- Protein Sequence
- MAALRNHMKTDHTNADYNSAFYKVVDDLKIDITEFKCNLCAQDIIPSVETFMTHLSRDHGIVVNFDVPFGVLPYRQGPTGHWMCLECDKSFTEFSQINSHLRSHVKIFTCEKCGATFLSEHGLRQHERKFKCYRTSYKPRFGKALKHRSNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRTHMATRHANFDIQLVFNRKLRKEFLKVDITDLQCKLCFMPIDTLDDLITHLKNDHKQPINADVQPGVLPFKLSDGTNWNCAICKIQFMDFKSLKKHTAEHFQNYVCDTCGEGFITETALIAHTKIPHGNKYSCPRCVATFSTIEERGIHLKTQHTTLPYMCMYCKEKPRFATWELRKRHLMEFHNYKPGADMYECTTCHMTFKTRSQKYHHNVKAHRMRKETDYNYQCGSCARGFISKLSLDKHIAKKHFHVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360094;
- 90% Identity
- iTF_00408815;
- 80% Identity
- -