Onub029876.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979762.1:1883144-1899310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.079 7.1 8.2 1.5 1 23 249 272 249 272 0.92 2 12 4.5 4e+02 2.7 3.8 1 23 280 302 280 302 0.95 3 12 0.21 19 6.9 0.7 1 11 337 347 337 351 0.90 4 12 9.2e-05 0.0082 17.5 2.5 1 23 451 474 451 474 0.96 5 12 0.0057 0.51 11.8 2.1 2 21 479 498 478 499 0.92 6 12 0.00036 0.032 15.6 0.9 2 23 515 536 514 536 0.94 7 12 0.00089 0.08 14.4 0.3 1 23 541 563 541 563 0.98 8 12 0.00044 0.039 15.3 2.7 1 21 572 592 572 597 0.95 9 12 0.00036 0.032 15.6 3.1 1 23 605 628 605 628 0.93 10 12 0.0029 0.26 12.7 0.3 1 23 634 657 634 657 0.96 11 12 0.033 3 9.4 0.4 3 19 671 687 669 688 0.89 12 12 3.1 2.8e+02 3.2 0.5 1 10 701 710 701 724 0.74
Sequence Information
- Coding Sequence
- ATGCAGGAAATTGATATAAATATTGAAGGGTACAACGTGAATGGAATATGTGTTGGCTGTTTGAATCACAATCGGAAAATGTCGTACATCGACGAAGTAAAGGATTGTTTCAAATTATTAGCTCAAATCGACGTCCCTGATTATTTATCTATCCAAGTCTGCTGGGAGTGCCTGGCAGCCGTCAGATCCGTGATGAAGTTCCGTCAACAGATCCAGAGGGCTTATACGATACTTATCAAATACTCTGCTAAGAACCCATTCCTGGACTCACCGTGGGACCTCACTCAATACGCTACAACCAACCTGACACGGACTCAAGTGGAAGTTGGATCGGATGTTCTAGATGGTCCGGATGTGAAAGAAGTAGAGATAGAGGTCAAGAGTGAGCCAGAAGATAACGAAACGTTACTGCCTAAACAGGAGGAATTAAAGATAGAAAATGAGTTTCCGGACATAGACGATCGTTTCTCCGACGACTTCCCGCCAGACCAAAACGCCACGTCTGAAGATGATATGCAGCTGTCCAAACTAAAAGAGAAAAAGgtgaaaaaagaaaagaagGCTAAGAAGAGAAGAAAGAAGAATTCAGATGAGTCAAGCGACAAGCCAAAAACAGAGCAAAAATCCTACAAACTACTCAAGAACCTCCCCGAAGATTTGGTCACCATCTACACCATGACCGAAGAAGAAATGTGGGTCATGAGGAACCAGGATCTAAAGGATAAGGAATTCTTGAGGTACAAGCATAGATGTGAGGATTGTCTGCTTACCTTCAACTCGGAGAAGCTGATGAAGGAACATACGCTGGCTAAGCATAGACTGAAAAGCGAAGACTGCCACAAATGCGATATCTGCAAATCTTACTTCCTTGGCAAGGATCATCTGCTCACGCATAGAGCTCAGCATCTCACAGCATATTGGTGCTCTGCTTGTGGTCACGCCACGTCTGTGAGGAGACGAGCGAAACAGCACGCGGCCACCCATCAAACAGTGACCAAGGAGAAGGAATACGAGTGCAGGAACTGTGGGAAGACTTTCCCCATCCAAAAGTACCAGGCTGACATATCTCTCAAGGAACTCTTCCTAACACCTGTAACAGCCTCGATGCTAGCTCCATCTCACAGCATACTGGTGCTCTGCTTGTGGTCACGCGACATCTGTGAGGAGACGAGCGAGACAGCACGCGGCCACCCATCAAACAGTGACCAAGGAGAAGGAATATCAGTGCAGGAGCTGTGGGAAGACTTTCCCGTAACATACTGGTGTTCTGCTTGTGGTCACGCCACATCTGTGAGGAGACGAGCGAGACAGCACGCGGCCACCCATCAAACAGTGACCAAGGAGAAGGAATACGAGTGCAGGAACTGTGGGAAGACTTTCCCATCAAGATCAAAACTCTCCTACCACCGAACGAAGAATCACAAAGAGAAACTGCAGTGCGACTGCTGTGGCAAAGTATTTATTAGCAAGATGATGCTGCGACACCATCTCAAAAGCCAGACACAAAGTAAAGAGGAGAAGGCAAAAGAAAAACTGTACATTCCTTGCAAAGGCTGCAACAAGGTGTTTCACTCTAAGAAGAGCTACCGGGCGCATGTGGTAATCCACAACGGCCTAACATATCCGTGTCAGATCTGCGGTAAACTCTTCCAATGGAAACGCAACTTGGCGCGTCACACTCGTGCGCATCGAGAAAGAGACGCAGGCGCTACTTACGAATGTCGCGCGTGTGGAAAGAGCTTCGCCAGTAGAGACTGTTACAACAACCACATGCGGCTGAGCAAGCGGCATGTGGCCGAGGAGGCGTTGGCTCACACATGCAACTACTGTGGGAAAAAGTTCGCGACGAAATACTGCATGGTGGACCATATCGACTGGGATCATTTGAAGAGGATCAAATACCAGTGCAGCGTTTGTTTCAAGGCGTTCAAAACGGCCAAAATAATGGTGGCGCATATGAACAACATACACGGAGGCAAGAAGAGTAAGGAACCAGATGGACAGCATCTGTGCGAGATTTGCGGGAAGTCTTACAAGTCCGTGAAGCGCCTCAAAGGCCACGTGTGGGCAATGCACACGAATCGCTCATCTTCCAAGATCTTCAAGTGCAAGCTGTGTCCAGctacttttttgtggcagaccTCCATCTACAAACATGTCAAGATGATGCATGGCGGCGCCAAGCGAGCCAAGCAAACGCGGACAATGCCAACCAAGAAGCAAGAGCCCTACCCGGAAATCGAACTGACGAACCGCATGTACTTCCAGCCCAATATGGCCGCCGGGATAGTGCCCAGCATTGGGCAAATCCAGCAAGTGCCTGTGGGCATTGTGCAGAATATTGTTGTGTAG
- Protein Sequence
- MQEIDINIEGYNVNGICVGCLNHNRKMSYIDEVKDCFKLLAQIDVPDYLSIQVCWECLAAVRSVMKFRQQIQRAYTILIKYSAKNPFLDSPWDLTQYATTNLTRTQVEVGSDVLDGPDVKEVEIEVKSEPEDNETLLPKQEELKIENEFPDIDDRFSDDFPPDQNATSEDDMQLSKLKEKKVKKEKKAKKRRKKNSDESSDKPKTEQKSYKLLKNLPEDLVTIYTMTEEEMWVMRNQDLKDKEFLRYKHRCEDCLLTFNSEKLMKEHTLAKHRLKSEDCHKCDICKSYFLGKDHLLTHRAQHLTAYWCSACGHATSVRRRAKQHAATHQTVTKEKEYECRNCGKTFPIQKYQADISLKELFLTPVTASMLAPSHSILVLCLWSRDICEETSETARGHPSNSDQGEGISVQELWEDFPVTYWCSACGHATSVRRRARQHAATHQTVTKEKEYECRNCGKTFPSRSKLSYHRTKNHKEKLQCDCCGKVFISKMMLRHHLKSQTQSKEEKAKEKLYIPCKGCNKVFHSKKSYRAHVVIHNGLTYPCQICGKLFQWKRNLARHTRAHRERDAGATYECRACGKSFASRDCYNNHMRLSKRHVAEEALAHTCNYCGKKFATKYCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHGGKKSKEPDGQHLCEICGKSYKSVKRLKGHVWAMHTNRSSSKIFKCKLCPATFLWQTSIYKHVKMMHGGAKRAKQTRTMPTKKQEPYPEIELTNRMYFQPNMAAGIVPSIGQIQQVPVGIVQNIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -