Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: RREB1
Assembly: GCA_963855985.1
Location: OY979756.1:7033862-7050500[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.05 4.5 8.9 0.8 1 23 91 114 91 114 0.96

2 12 5.6 5e+02 2.4 0.7 1 11 156 166 156 177 0.82

3 12 0.024 2.2 9.8 0.1 1 23 305 327 305 327 0.97

4 12 0.0013 0.12 13.8 0.4 1 23 336 358 336 358 0.99

5 12 0.00081 0.073 14.5 2.0 1 23 364 387 364 387 0.97

6 12 0.0033 0.29 12.6 1.6 1 23 736 759 736 759 0.96

7 12 0.00027 0.025 16.0 1.3 2 23 953 974 952 974 0.97

8 12 0.028 2.5 9.7 5.3 1 23 980 1003 980 1003 0.97

9 12 0.24 22 6.7 1.4 1 23 1036 1060 1036 1060 0.91

10 12 0.86 77 5.0 0.2 1 23 1085 1108 1085 1108 0.87

11 12 0.016 1.4 10.5 0.2 2 23 1148 1169 1147 1169 0.96

12 12 0.031 2.8 9.5 5.3 1 23 1175 1197 1175 1197 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.05	4.5	8.9	0.8	1	23	91	114	91	114	0.96
2	12	5.6	5e+02	2.4	0.7	1	11	156	166	156	177	0.82
3	12	0.024	2.2	9.8	0.1	1	23	305	327	305	327	0.97
4	12	0.0013	0.12	13.8	0.4	1	23	336	358	336	358	0.99
5	12	0.00081	0.073	14.5	2.0	1	23	364	387	364	387	0.97
6	12	0.0033	0.29	12.6	1.6	1	23	736	759	736	759	0.96
7	12	0.00027	0.025	16.0	1.3	2	23	953	974	952	974	0.97
8	12	0.028	2.5	9.7	5.3	1	23	980	1003	980	1003	0.97
9	12	0.24	22	6.7	1.4	1	23	1036	1060	1036	1060	0.91
10	12	0.86	77	5.0	0.2	1	23	1085	1108	1085	1108	0.87
11	12	0.016	1.4	10.5	0.2	2	23	1148	1169	1147	1169	0.96
12	12	0.031	2.8	9.5	5.3	1	23	1175	1197	1175	1197	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCCAGCGCCCCCGCGCCCCCCGCGGCCGAGCCGCCTTCCTCTCAACAAATCAAAACAGAGGAGGTCATCACGGAAGCCAAAGTCGAGGCTGAAGAAATGGAAATGGTGGAGAAACAGGATTTTAGGCCGGCGAGGACGACCAGCATCGACAGCGACAACCGCTCGGACAGGAGCGAGGAAGAAGATACTAGAAGATCTCGGAAGAGAGCAGCCTCGACTTCTCCATCCCCAATCACAATGGATAAAAGAATCGCCAGGTTCGAATGCCCGAAGTGTCGACTGCGCTTCGACTCAGCTAACACCTTCGATCTACACAGATTCACAGCACACGGCGACGACACCAGAGCGGGCTTCGATGACCTTACCTTCGTAGACTTCTCCAGCAAGAAGTTTCCAGAGATTGCGCGAGGTGTCTGCGAACGCAACCCCCACATATCGGTCACGGAGCAACGCTACCGATGTGATCTGTGCACAAAAGACTTCCCATGTGGCCAAGCCTTAGACATTCACAGGAAAACGTGCACCGGCAACGCCAGAATCCCTAGTCCCGAAAGAGATAGGAGGGAAGACTTCTTTGCAAAGCTTGATCTCAGAAACAGATCCTTTGGGATCCCTGGAACATTGACTCCACCTATGGACAGATTCACCCCTAAGTTTGAAGATGGGCATCTCACTACCAACGGGATTAGACACATAGATGCTGCCAGAGACTTGGCTGATATTCAATCTATCCTGAACGTCACATCTGCTGGAAGTCTCTTAGAAAGACTGACCGGTACTAGAGTGGCATTAGAAAGTGCAGTATTAACACCTCCAGACACTGCTAGTAAGGATAGAGAACACGAAGAGACCCAGGATAACTTTGCAGCTGAGTTTAGACGCATGAAGTTACGAGGCGAGTTCCCCTGTAGATTGTGCCCTGCTAAATTCCCTAACTTACGTGCCTTGAAGGGTCACAATAGAGTGCATCTTAGTGGAACAGGCCCAGGACCATATCAATGTAACATGTGCCCTCACGCATCTCTAGATAAGGCAGCTCTAGTAAGACACATGAGGACCCACAATGGAGATCGCCCTTACGAATGTGCGGTCTGTAATTATGCATTCACCACAAAGGCTAACTGTGAACGTCATCTGAGAAATAGACACGCTAAAGTCACGAGAGAGGATGTGAAACGCTCCATCATTTATCATCCATCAGAAGATCCTAATAATGATGAAGTTAACTCAAAGCTAGCTAGAGATGACGTCAAACGATCTCTAGCATTCCAAACTCCTGAATTTGAAAGACGCACTGAGAGCACCGGTCGTGACACGCCTTTGACACATTTCACTCCCACCTTCATTGCTGAAAGACATCCAGTTGCTTCACTTACTGCAAAACCTTTACCAGAAACTCCGATATTACCACCAAGGGAAACAGAACAACCTTTGCCAAGAATTAAAGTAAAAGGTATCGGTCAACTTACTCAAATACCTGAATACCGACCGCCAGAGATTCCTTTTAAGACCAATGACGTACAATCTGATACATATGACGAGGAAGCTCCAGTTGATCTCAGTACAAGTGACAACAACAGCTGTGACGTACTCGATCTCAGTAAGAAGAAGCGTGATACTGAAAACGATGAGCCTAAACCCCCACCGAGACCCTCATTTGAACCTGATCCCGCCGCTGTTGCTGCTTCTACGTTTGAAAAGGCAAGACTTCTAATAGCCCAGCAAAGGCTTTTCGAAAATACTCTTCCCAAAATTGATCCTGCTTATTATGCCTCTCAATTATCTCAGCTCTACGCTGGCACAGTTCCAGGAATCCCTGGGTTGCCCTTACCGCCGTCTTTTCCAATCAGCCCTTACTTTCTTCAACCCTCGTTTTTTCCTCACCCAACTGATTCCCAAGAACTTGCCGAAATAAAACAGCGTatacaaaaagaaattattCGCGGTCTGAGTATGTCTGGCGGTAGACTTGTTCCGAGCGACCAGGAGGCTCCTACAAAACAAGAGCCAGAGGAAGAAGATCAGAAGCCCATACCACAGCCAATATCTCCTTCACCATCTCCTCAACCCGAATCTCCAAGGCCTCTGAACAATACTGGTCTAGTTTCACAAAATGACTCAGTGAAAATGGTTATAAAAAACGGCATACTGATGCCAAAACAGAAACAACGTCGATACCGCACTGAAAGACCTTTCTCTTGTTCTCAATGCTCAGCTCGTTTCACTCTACGGTCAAATATGGAGAGACATGTTAAGCAGCAACACCCGCAACATTGGAGTGTCAGGAGACCCGCCCCAAGGGCCCCACCGCCATACCCAACACCTGATGCTTTGGCAGACCGAGTAAAATACGCACTCTTAGCCCGTCATCTAGAAAGGCCATTGCAGCAACCAGAAAGATCACCAATCCGGAGAGATTCCGATGAAGTTGCTGACAACGAAGAAGATGAAGATGATACTTTAGTCATAGATGAGGAGCCTGAAGATAAAAAACCTGATGAACATTCTGCAGCACATCGAGCTGCCGCTGAAATATTAATGGCGACCCGTCAGCAAGAACTCCACAAGGACTTCGATCTCAAAATTGCTGGGAACTTGATCAATAAACCTGTTCTCATGACACCTGAAAAGACTGAGACGGGCACAGATCCTATTCAGCTGTCTTCGCATGATCCTGTCCCTGTGGTCCCAACTCGCAGTGACGAGGAAGAAGATGAAGAAGGTCTAGTCGCGTCTACAAGTGAAGGCAATAACTCTGGCAGTGATGAAAATAAGTCGGAGTCTGATACTGGAACTCAACCACCGAAGAAAAAATCCGCCTACAGCCTAGCTCCGAACCGAGTTTCTTGTCCGTACTGCCATAGAAAGTTCCCCTGGTCGTCGTCGCTCCGCCGCCACGTACTGACGCACACCGGTCAAAAGCCTTTCAAGTGCCCCCACTGCCCTCTGCTCTTTACCACGAAATCGAACTGCGACCGCCATTTGCTGAGGAAACATGGAGGATCTGCGAGAGCCATTCTAGCCGAGCCTATTCCTGATGCTGTACCGCCTCCGCAAGCAGCCAATGACAGCAGAGCCGTTCCAGAGAGGCCGTTCAAATGCGCATCATGTCCTAGCAGCACCTTCTCATCAATGGACACTCTGAAAAAGCACATGACTTCTCGGCATGGAACTGGCGACTCGCAACCTGGCTCACCTAACCCTGATGTCAACGATGACGCGGGTGACGTCAGCTTAGTCTTCAAGTGCCATCTGTGTGAAGCATCGTTTGGGGAGAGAGGGGCGGCGTTGGGTCACCTGGCTACAACGCATTCGGCTGAATACGAGCAACTGGTCAATAAAGGGGCGCTGGATGCCGCTAGCGATAGAAGCGAAAGTGCCGATGATGATGAGCGAGGGAGGGTTCCTGACCATGTTAATAGAAAGGTTGTCTGCGCCTTTTGCGTCCGGCGTTTCTGGTCAGCAGAAGACCTTCGTCGCCACGTCCGAACGCACTCTGGCGAGCGGCCCTTCGCTTGCGACCTCTGCCGGCGGCGGTTCACCCTCAAGCACAGCATGCTGCGGCACCGCAAGAAGCACAGAGAAGAGACCGATGATGAGGAGGCGTCGCCACCTAACACGCCTGTGGAGCCCGAAAATCTCACTAATGGATACCGTTACCAAGACGACGACGGCTCTGGCAACGAGATCCCAAGCAACGTCAACAACAACAACTCACCACCTTCCGCTCCTTATGAAAAAAAGCTCAAACTCGACATGACCTCCCGAAAGTACTCATCGGAGGCTGAAAACGACACGGAAAACGGCGGCGACCTCATCGGGAAGCTTCTAGGCATCCCAGACAAGACAATCATCAACAAACTGCTCTCTTCCGCGGACGAAGCAGCAAAATTCCTTGGAGTAAACAAATGA
Protein Sequence: MQGAASAPAPPAAEPPSSQQIKTEEVITEAKVEAEEMEMVEKQDFRPARTTSIDSDNRSDRSEEEDTRRSRKRAASTSPSPITMDKRIARFECPKCRLRFDSANTFDLHRFTAHGDDTRAGFDDLTFVDFSSKKFPEIARGVCERNPHISVTEQRYRCDLCTKDFPCGQALDIHRKTCTGNARIPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFEDGHLTTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESAVLTPPDTASKDREHEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFQTPEFERRTESTGRDTPLTHFTPTFIAERHPVASLTAKPLPETPILPPRETEQPLPRIKVKGIGQLTQIPEYRPPEIPFKTNDVQSDTYDEEAPVDLSTSDNNSCDVLDLSKKKRDTENDEPKPPPRPSFEPDPAAVAASTFEKARLLIAQQRLFENTLPKIDPAYYASQLSQLYAGTVPGIPGLPLPPSFPISPYFLQPSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVPSDQEAPTKQEPEEEDQKPIPQPISPSPSPQPESPRPLNNTGLVSQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDALADRVKYALLARHLERPLQQPERSPIRRDSDEVADNEEDEDDTLVIDEEPEDKKPDEHSAAHRAAAEILMATRQQELHKDFDLKIAGNLINKPVLMTPEKTETGTDPIQLSSHDPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDAVPPPQAANDSRAVPERPFKCASCPSSTFSSMDTLKKHMTSRHGTGDSQPGSPNPDVNDDAGDVSLVFKCHLCEASFGERGAALGHLATTHSAEYEQLVNKGALDAASDRSESADDDERGRVPDHVNRKVVCAFCVRRFWSAEDLRRHVRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDEEASPPNTPVEPENLTNGYRYQDDDGSGNEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEAENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01281704;
80% Identity: -