Onub030118.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ostrinia nubilalis
Gene Symbol
-
Assembly
GCA_963855985.1
Location
OY979762.1:5516488-5538799[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.93 83 4.9 0.3 2 23 267 288 266 288 0.93
2 12 0.015 1.4 10.5 0.6 1 23 432 454 432 454 0.98
3 12 0.0097 0.87 11.1 9.6 1 23 461 483 461 484 0.94
4 12 0.11 9.9 7.8 1.3 1 23 488 510 488 510 0.97
5 12 7.2 6.5e+02 2.1 0.9 1 23 515 538 515 538 0.81
6 12 0.017 1.6 10.3 0.3 1 23 542 565 542 565 0.92
7 12 0.0081 0.73 11.4 0.2 2 21 578 597 578 602 0.93
8 12 2.5 2.2e+02 3.5 0.3 2 23 655 677 654 677 0.94
9 12 0.021 1.8 10.1 1.3 2 20 693 711 692 714 0.89
10 12 7.3e-05 0.0066 17.8 1.6 1 23 720 742 720 742 0.99
11 12 7.3e-05 0.0066 17.8 2.1 1 23 749 771 749 771 0.97
12 12 4.4e-05 0.004 18.5 1.3 1 23 777 800 777 800 0.95

Sequence Information

Coding Sequence
ATGCGGTGTTGTGCGCCCGGTTGTAAGAATGACTCCAGAGTCATTTCTAAGTCGAAAGGGATCACATTTCATGTATTCCCGAGTGTGCCGTCCCTCAAAACGAAATGGGTCGAGGCCATCGGGAAAGACTCGTGGAAGCCACAGAAGAGGAGCTCGTTGTGTTCGGAACACTTCCTGCCCGAAGACTTGTACGAGACTAAGAACGGCATGAGGAAGGTGCGGTTCGGAGCTCTGCCTATTGTTATACAgGTGTGCAGAATATGCTTAGCGGTGGATTGCAAGATGTTTTCCATAAGAAAATTCAAGTTGGAGCAATCGTTTGAAAATTTGACCGGATCTGAGGTCAACAAAGAAGACAAGTTTCCTCAAAAACTGTGCTATATTTGTTTCCGACGGCTCGTCAACTGTGCGCGACTCAGAGCACAGAGTCTGAAGGCTGAGTGTCTCATGATGGAGATTATGAGGAAACAGGACCTCACATACGAAAACATAAAAGCGATTAACCGCGAAAAAAACTTGCTCACACCGAATCTAGCTCCAAAACAATTCGAATCCAACCACTACGATTTATTCCTTGAAGACGATAGAACTAAAGAAATAAACTTCGACAATACATTCAGCAATGAAGTGTTTTTGGAAGAGTTTGACGCAAGAATGGAGACAGATATGAACGAATCCGCCGATGGGTATTCCTCAGATGATTCTCTGCCTCTAGAAGTTAGTAAGAGAAAGAAAGAGATGGAAGAATCTGAGAAAATGAAGGCGGGTGATGATGATAAACGTAAAGGTGATGAGCTGAAATGCTTGGTTTGCGCGCAGAGTTTTAAAGAAGAGTTTGATTATTACAGCCATGTAGCGAACCATACTGAAcACCCAGTGGTTGTCACCGAAAACCAAATAACCATAGAATTCGACAGAAAGTACTACGAGCCAAACGTCGAAGAAAACGACACAAAAGATGACGAATTAGAAGAACTATCACTCGTCATAGACACAGAACGTAAAGGCGATGACGACCTAAAACTAGAACAGATATTAGACGACTATGTAGCGTCAGAAAAAGATTATTCTAGTGACGAAAGCACGCTCCAAGAagtaaagaagaagaaagaacaaaaaaaactCAAGAAAAAAccgcaaaaaaataaagaacCGAAAATTGATAGGCGAAGAAAACCGTTTTTGAGTGACGATTTGAACGAAACGCTGTTTACAATAATAGATTTGACGTATGAAGAGCAAGTGGCTGAAATTGAGAAAAGGCAAGAGAGTTCGAACTTTAAGAATGCTGTGTTTAAGTGTATGGAATGTTACAAAGGTTTTTTAGACGAGGATGCGTATAATTCTCATATGCTGAGGCATACGGATGAATGCGGCGTACACCGGTGCGATGTATGTAAGACCCATTTCAGACATCCACACGCTCTCAGAAAACACATCACTGCACATCACACACAGAGATTCAGCTGCAAGCAGTGTCCTTACGTGACCGCGCACAGACAATCCGCTCGGTTGCACGAGCGGTGGCACAAGGGAACTAAATACGCCTGCCCACACTGCCCGGACGAGTTCCTCAAGTTCACAACCTACATGGGCCACATTCGCATAAAGCATCCATCCGACTTCGTCTGCCAACTATGCGGGTATTCATTCGTAAGCGAAAAAGGGATAGCGCTGCACAAGAAACTGAAGCATCGGCAGGAGAATACGCAGatACCAGAAGATGGCCCGACGTGCGATCTGTGCAACATTCGCTTCGTGGACACAGACGCGTACAAGCGACACATCAGCGTGTCAGCGAGGCACAACCCTGTTGATAAGGGGTCAAGAGAACCAAACAAGCCACCGAACGGGAAAAAATCGAGAGAGACCAAAGATAGAGAGAGGAGAGCCAAGGATAGGAGAGAGAAGGACGAAGATAAGCTCTATCCCAGTCAGATGCGGAAAGCGGAAGGGCCTATACCGTGCGAGCAGTGTGGCGTCCAGCTTGAAGACTCGCGCGCTTACCACGGCCACTTCAGACGGATGCACCCCGACAAGAATCGAACCAAATACCCGTCTATGAAGTCGCCTTGTATGTGCGAACTTTGCGGGAGAATGTTCCAGAGTTACGCTCTCCTAAAAGACCACCGTTGGACGCACACCGGGGAACGCCCTTTCAAATGCGACTCCTGCGACAAATCGTTCCGGATGAAACAGCGTCTAGTCGCGCACAGGCGCGTGCACAGCGCCCACAAGCCGTCTTACGTGTGCGGCGCTTGCGGGAAGCAGTTTAGCACGCATAGCAACCGGCAGCGGCATATGTTTATCCACACGGGCCTGAAACCGTTCAAATGCGAGATGTGCGGGAAGGGCTTCAAGCACGCCAGCGAGAAGCGGGCGCATATTACGTACGTGCACCTCAAGAAGCCCTGGCCGAAACGCAGCCGCGGGAAACGGCGGGACACGCGACCGGTGAGTGTACACGCGACGCGACGCAACGCGACAAGACGCGACATGACGCGACACTACGATACAATACGCGACATGAAGCGACGGATAGGTTAG
Protein Sequence
MRCCAPGCKNDSRVISKSKGITFHVFPSVPSLKTKWVEAIGKDSWKPQKRSSLCSEHFLPEDLYETKNGMRKVRFGALPIVIQVCRICLAVDCKMFSIRKFKLEQSFENLTGSEVNKEDKFPQKLCYICFRRLVNCARLRAQSLKAECLMMEIMRKQDLTYENIKAINREKNLLTPNLAPKQFESNHYDLFLEDDRTKEINFDNTFSNEVFLEEFDARMETDMNESADGYSSDDSLPLEVSKRKKEMEESEKMKAGDDDKRKGDELKCLVCAQSFKEEFDYYSHVANHTEHPVVVTENQITIEFDRKYYEPNVEENDTKDDELEELSLVIDTERKGDDDLKLEQILDDYVASEKDYSSDESTLQEVKKKKEQKKLKKKPQKNKEPKIDRRRKPFLSDDLNETLFTIIDLTYEEQVAEIEKRQESSNFKNAVFKCMECYKGFLDEDAYNSHMLRHTDECGVHRCDVCKTHFRHPHALRKHITAHHTQRFSCKQCPYVTAHRQSARLHERWHKGTKYACPHCPDEFLKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIALHKKLKHRQENTQIPEDGPTCDLCNIRFVDTDAYKRHISVSARHNPVDKGSREPNKPPNGKKSRETKDRERRAKDRREKDEDKLYPSQMRKAEGPIPCEQCGVQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCELCGRMFQSYALLKDHRWTHTGERPFKCDSCDKSFRMKQRLVAHRRVHSAHKPSYVCGACGKQFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRSRGKRRDTRPVSVHATRRNATRRDMTRHYDTIRDMKRRIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01125007; iTF_01124660; iTF_01125536;
90% Identity
iTF_01124660;
80% Identity
iTF_01125536;