Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979763.1:710308-715426[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.019 1.7 10.2 2.8 2 23 83 104 82 104 0.94

2 12 0.00032 0.028 15.8 0.2 2 23 111 133 111 133 0.95

3 12 7.8e-06 0.0007 20.8 1.7 1 23 148 170 148 170 0.99

4 12 0.0014 0.13 13.7 4.7 1 23 176 198 176 198 0.99

5 12 0.0045 0.41 12.1 1.4 1 23 204 227 204 227 0.97

6 12 0.17 15 7.2 0.3 2 20 236 254 235 256 0.93

7 12 0.27 24 6.5 6.7 1 23 356 378 356 379 0.93

8 12 0.18 16 7.1 0.3 1 20 387 406 387 408 0.91

9 12 0.79 70 5.1 4.4 2 23 416 437 415 437 0.97

10 12 0.011 1 10.9 5.0 1 23 440 463 440 463 0.92

11 12 0.00066 0.059 14.8 1.0 1 23 468 490 468 490 0.98

12 12 0.0035 0.31 12.5 1.8 1 23 496 521 496 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.019	1.7	10.2	2.8	2	23	83	104	82	104	0.94
2	12	0.00032	0.028	15.8	0.2	2	23	111	133	111	133	0.95
3	12	7.8e-06	0.0007	20.8	1.7	1	23	148	170	148	170	0.99
4	12	0.0014	0.13	13.7	4.7	1	23	176	198	176	198	0.99
5	12	0.0045	0.41	12.1	1.4	1	23	204	227	204	227	0.97
6	12	0.17	15	7.2	0.3	2	20	236	254	235	256	0.93
7	12	0.27	24	6.5	6.7	1	23	356	378	356	379	0.93
8	12	0.18	16	7.1	0.3	1	20	387	406	387	408	0.91
9	12	0.79	70	5.1	4.4	2	23	416	437	415	437	0.97
10	12	0.011	1	10.9	5.0	1	23	440	463	440	463	0.92
11	12	0.00066	0.059	14.8	1.0	1	23	468	490	468	490	0.98
12	12	0.0035	0.31	12.5	1.8	1	23	496	521	496	521	0.94

Sequence Information

Coding Sequence: ATGGATCAACCGGACACATCCCAAGAAACCGATGCACAGGATTGTATGATCCTCCAAGTGCCTGCCATAGAAGAACCCATAGATTCTGATAACCAAGACCCGATGTTGAAAGACAACGTCATGAACATGTTCACGAGCGTCTGGGTGAAGGTGGAGATGGAAGAAGAATCCCCGAGCAATATCGTCGTTGAACCAGATATCACCCACTTCAGAGAATCAAcgagaaagaaacaaaaaccgCTATTGAAATGTGACGTGTGTGATTATACTACAACATACAAAAACTGCTTGAAGCTCCACAAACTGGGTCACGGAGGAGTGAAGCCAAACTCTTGCGAACTCTGCGACTACACCACAAAATATCCTACAGCGTTGAACAGGCATATGGCTATAAAACACCAATCGGAAGAGCAGTTGAGCAAAATGAGGTCGTCACCAAATTATAAATGTGGCACCTGTGACTATACTACTTATTACAAATGGAACCTGAACGCTCATATGCGAAAGCATAAAGATAACAAACAGTTTCAATGCAGTGAATGTGATTATACTACAGCGTACAGGCATAACTTTCTTAAACACAGTAAAACGCACAACGATAATATGGTTTATAAATGCGATAAGTGTCCATTTGTGACGAAATATGATGGCCACATCACTAGGCATATGGCCAAAATACACAACGAGGTTTCGGACAAAGCAAACAAGTGTGAATATTGCGATTTTTCAACGAAGGTAAATTGGAGGTTGACCGCTCATAAGGTTAGAAGTAAAcagaaagaaatattgaaatgtgAGTCATGCGATTTCGAGACTTATTACATgtgcgaaaacaaaaaacataaaagGACTCACACGAAAGTGTATAAAAAGAACCAAATACCTCTAGAAATGGAAGACCAACTGACTGATTCATTAACTACTACAAATAAAGAATTCAAATTCCTAAAGGAAGAAAATgaaaaagcaaaagaaaaagatcATGCAACACATAATTATATGCTAGATGGGTTCGTAGAATGGAAGAACATTCAAGTTTTAGAATCTGAGAACAAAGATCGACCGTTTCTATGCCATATGTGTAACTACACATCGCGTTTCAAAGCGTCAGTCCAAAGACACTTTCAGAGACACCACACCAGCTCCCAGATTCGTCCGTACAAATGCGTTAACTGTGACTTCGCAACGAAAACTAAAGATCAGATAGCGTTGCACAATAAACGAAGCGAATCTAAAGTGCCTATGAGCTGTAATTTATGCCAATTCACGACGAACTACAAGTGTCAATACGTTATGCATCAGAAGTCTCACTACGAGTACAAGTGTACGAAGTGTGAGTATATTTGCAAGCATAAATATGAGATGCAGAAACATGTTACTGCGGTACACCTTGGGGACGGTTTTAAATGTCAGTATTGTGGTTATTTAGCTACAAGGAAAGAGAATTTGCTCTCTCATGAGACAACCCACACAGGGGTCAAACCGTTCCATTGTACGGTACCTCAGTGTGGGTATAGATCTATTAggaagacgttgcttcgtaacCACATGGCCCGTTTTCACGGCGACATAAAAGATGATGTTAAGATTGTCAGCGATAACAAAATTCAGGCACTAAAATTGCATATCGAACATTTGTAA
Protein Sequence: MDQPDTSQETDAQDCMILQVPAIEEPIDSDNQDPMLKDNVMNMFTSVWVKVEMEEESPSNIVVEPDITHFRESTRKKQKPLLKCDVCDYTTTYKNCLKLHKLGHGGVKPNSCELCDYTTKYPTALNRHMAIKHQSEEQLSKMRSSPNYKCGTCDYTTYYKWNLNAHMRKHKDNKQFQCSECDYTTAYRHNFLKHSKTHNDNMVYKCDKCPFVTKYDGHITRHMAKIHNEVSDKANKCEYCDFSTKVNWRLTAHKVRSKQKEILKCESCDFETYYMCENKKHKRTHTKVYKKNQIPLEMEDQLTDSLTTTNKEFKFLKEENEKAKEKDHATHNYMLDGFVEWKNIQVLESENKDRPFLCHMCNYTSRFKASVQRHFQRHHTSSQIRPYKCVNCDFATKTKDQIALHNKRSESKVPMSCNLCQFTTNYKCQYVMHQKSHYEYKCTKCEYICKHKYEMQKHVTAVHLGDGFKCQYCGYLATRKENLLSHETTHTGVKPFHCTVPQCGYRSIRKTLLRNHMARFHGDIKDDVKIVSDNKIQALKLHIEHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01124960;
90% Identity: iTF_01124960;
80% Identity: -