Onub028692.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979760.1:3127516-3130086[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.7e-05 0.006 17.9 1.4 1 23 296 318 296 318 0.97 2 11 0.001 0.091 14.2 3.1 1 23 407 430 407 430 0.97 3 11 0.0072 0.64 11.5 3.8 1 23 434 456 434 456 0.97 4 11 0.04 3.6 9.2 0.9 2 23 478 500 477 500 0.90 5 11 0.14 13 7.4 2.3 1 23 504 527 504 527 0.98 6 11 0.021 1.9 10.0 0.2 2 23 550 572 549 572 0.93 7 11 8.3e-06 0.00075 20.8 2.2 1 23 582 604 582 605 0.96 8 11 0.0015 0.13 13.7 1.1 2 23 620 641 619 641 0.96 9 11 0.0086 0.77 11.3 1.3 1 23 647 669 647 669 0.94 10 11 1.7 1.6e+02 4.0 3.8 1 20 675 694 675 699 0.91 11 11 0.049 4.4 8.9 0.0 2 23 740 761 739 761 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAACTTAATTCAATACCAGATGCTCTTGAAAACAATGTAGAACATAAAGAACCGCTGGACATAAAATCCGAACCAGATGTAAATTTAACTCACCAAGAAAATGTTATGGTTAGGATCAAAAATGAGGAGCAGGCTCTCCTTGAACAAACAAATGAATCTAATATGTATTCCGATCCATCCTTTGATATGGGACACCTACAGGTTAAGGAAGAAGTTTCGATGGAACATGTCCCTAATAACTATGAGaatgcaaaaacaaatgaagagAGTCACAATTCAAATATTGGAATATCTGATAgtgcaaataaagatattacaAATGCAGAAAATACAGAGCTTGAAGCAAATGCAGATGTTAAAAACGAAATGATAATGAGCGAGGACTCCCTAGTTTCGTACGATTACCCAAGTTTTGATGACTCGGTGAGCATGGACAGCAATGACATTGCTGCTTTGGGTAATGTAGAAACATGTCTGCAGGAAGAAATACATATTAAGCCTGAATGTCTTGATGGTGCTgagGATACACACAGAGAAGAATATCACAACATAAAACAAGAAACTGATGTTGTGACAGAAACAcatttaatatcaaataaacttATCAACACCACGTCAACGGTCACCAATCCACAGGACGGAATGATTGAATCTCACACCACAAAGACTTTAGTCATGGAAATATTACCTGTACCTCATGGAGAGGTAAACATTTCCAAAATAGGGAATCCAGAAGAAATCCTACCCACAGTATACAACGAGATGGACTGTGAAGACATGTTCCAATTAAATTCTATTACGGGAAATGTGTTATCATTGGAACAAGAAGCATACGGTTTGTTGAAAGCCAAGAAATCTCAGAATCACAAGGGCGTTATGCATCCATGTCTAAAATGTACGAAGGAATATAAAACTGCTGCTTTGTTAAAAAGACACATGTCCATTCATAGTACAATCGAAAAAAGAGCTATGGGCTTCATCAAAGGACAGCTAACTAAGAAAGCAAATCGTAAAAAACATTTCCAGGAAATAGAAATGGAAAGTGAAATGATTACCTTGGAGACGATAAAAGCTGAACAATGTGATTTAGATGTAAAGCCAGAAATCAAGAAGGAAGATTATGAATGTACCTGCGGCAAACTGTTTCAAAGAAGAAGCAGAATGGAGACATGTCTACGTTCTCACAATGAGTACGCAGATGCTAACCCAAGCCACCAATGTTCTACTTGCTTGAAATACTTTAGTGACAAGAACGATTTAGCTACTCATCGAAAAAGAGCGCATACTAAGAAATTTCACTGTAAATTTTGTCCTACAGACTACAACACGAGGAAAGAGCTATTTAAACATTTGCAGGCACATCAAAAGGTTCAGTTGATGGAGTATAAAGTTATATCAGAAGTTGTGTTGGGTAAGCAGAAGTTGCGATGTTTTATGTGTGGGAAAAGCTATGTTGAACTATCAGAATTGAAATGTCACGTCATGGAGGATCACACCAGTCCGTACAGCTGTATGCATTGCAAGAATACATTTGCAAAGATTATTGAATTTGGTGATCACATGAAGACTTACCATCCGGATGTAGAAGGGCAGTCGGTTTTGGACGTCCTCGAGGCGTTTTCTTTGTTAGTGAAAGCTTGGAAGTGCGAGGAATGTGGCTTACAATTTCACGAAGCAGACAAGCTCGCCTTGCATCAGATAGAGAAACACAGTCCAGATATTAAAGCAGATCCGCAGTTTCAGTGTGAGGATTGTAGAAGAGTGTTTATTAGTCAAAAAGGTCTCACGTCTCATAGACGGGTGCATCACAGTGAGGCGGTTGAAGAAACTGAGCCGACCATAAAAGGCATAATGTGTTTGGAATGCAGAAAGATCTGTAAAGACATGGATGCGTTGACATCACATATGAGGCTACATTCCCCGGATAGGAAATACCCTTGCAAGTTCTGCGATTTCCGGTTTTCGACGCCTGAAAAGAGGAAAACTCATGCGGAGTTGCATACGGGGGACATGAAGTATGTGTGCTTTATTTGTGAGTACCAGTGCAGTTCTGAAAATCGGTTGAAGCATCACAAAGGTTCTGTGAAGCATTTGAATATGAAGCAGTATTTGGCTTCTGGGGTGGCGTTTGCACAAGAACAGTCAACGACTGAAAAGTCACAGCCCGAGAGCGAAGTCAAAGGGAATGACATTCAAAGCAGTGAAACGGTGCCTTGCGATGTCTGTGGAGACAGTTTTCCCTCGGAGAGGGAGATGTTAGACCATAAACAAACGCACCCATTCATAGAGTTCCCCAACGATGATAAACCCACaagaatatttttcaaataa
- Protein Sequence
- MEQLNSIPDALENNVEHKEPLDIKSEPDVNLTHQENVMVRIKNEEQALLEQTNESNMYSDPSFDMGHLQVKEEVSMEHVPNNYENAKTNEESHNSNIGISDSANKDITNAENTELEANADVKNEMIMSEDSLVSYDYPSFDDSVSMDSNDIAALGNVETCLQEEIHIKPECLDGAEDTHREEYHNIKQETDVVTETHLISNKLINTTSTVTNPQDGMIESHTTKTLVMEILPVPHGEVNISKIGNPEEILPTVYNEMDCEDMFQLNSITGNVLSLEQEAYGLLKAKKSQNHKGVMHPCLKCTKEYKTAALLKRHMSIHSTIEKRAMGFIKGQLTKKANRKKHFQEIEMESEMITLETIKAEQCDLDVKPEIKKEDYECTCGKLFQRRSRMETCLRSHNEYADANPSHQCSTCLKYFSDKNDLATHRKRAHTKKFHCKFCPTDYNTRKELFKHLQAHQKVQLMEYKVISEVVLGKQKLRCFMCGKSYVELSELKCHVMEDHTSPYSCMHCKNTFAKIIEFGDHMKTYHPDVEGQSVLDVLEAFSLLVKAWKCEECGLQFHEADKLALHQIEKHSPDIKADPQFQCEDCRRVFISQKGLTSHRRVHHSEAVEETEPTIKGIMCLECRKICKDMDALTSHMRLHSPDRKYPCKFCDFRFSTPEKRKTHAELHTGDMKYVCFICEYQCSSENRLKHHKGSVKHLNMKQYLASGVAFAQEQSTTEKSQPESEVKGNDIQSSETVPCDVCGDSFPSEREMLDHKQTHPFIEFPNDDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076992;
- 90% Identity
- iTF_01124945;
- 80% Identity
- -