Onub022301.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979752.1:5596631-5604567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3 2.7e+02 3.3 3.6 2 19 52 69 51 74 0.88 2 14 0.87 78 5.0 1.4 2 23 82 104 81 104 0.93 3 14 0.0021 0.19 13.2 1.6 1 20 109 128 109 130 0.95 4 14 2e-06 0.00018 22.7 0.4 1 23 141 164 141 164 0.97 5 14 0.085 7.7 8.1 0.7 1 23 170 193 170 193 0.93 6 14 0.00013 0.011 17.0 0.3 1 23 199 221 199 221 0.98 7 14 0.0035 0.31 12.5 0.6 1 23 226 248 226 248 0.97 8 14 1.2e-05 0.0011 20.2 1.6 1 23 254 276 254 276 0.98 9 14 0.00024 0.021 16.2 2.6 3 23 281 301 279 301 0.97 10 14 2.5 2.2e+02 3.5 0.3 3 23 309 334 307 334 0.84 11 14 0.00027 0.024 16.0 0.3 1 23 340 362 340 362 0.98 12 14 5 4.5e+02 2.6 0.7 3 23 370 392 369 393 0.80 13 14 9.1 8.2e+02 1.8 0.3 9 23 533 547 521 548 0.84 14 14 9.1 8.2e+02 1.8 0.3 9 23 664 678 652 679 0.84
Sequence Information
- Coding Sequence
- ATGAGACCTATTAAATCTGAGGTGAAGGAAGAAATTGCTCTTGGTAATGAAGACATTCCAGTATGCACTGTGTGTAATAGCGGTCCTGGTAGATATTGCCAATGTCAGCAAAGACTTCTGGACAAAATAGGACCCAAAAGAAAGGCCATTATAAAATGCCAGAAATGCCCTAAAATTTACAAGTTTAAAAAGAGGTATTTGCAGCATTGTTTAAATGAACATTCCACAACACCTGGCAGTGTGTCTTGTGCGCAGTGCAGCGTCACTTGTCCCGACAAGAAAGTGTTAGCTAAACACATCGAGCATACCCACAATCGCAAAGAATTTGAGTGTCCCCGGTGCTCCAAGAAGTTTGTGAGACACGCTCATGTGTTGAGGCACTTGTCCCAGAGCGGCTGTAATGGTTCTCCAGCAGCGTCATATCCGTGTGAGATATGCAATTCTACATTTTCTAGAAAAGATAACCTGATAGTGCACCTTCGCTATCaacatattttaaataatgGATATGCATGTAAACTATGTGAATATGGATCCAAGAATTTCTCTAAACTCGTCAAGCATTGGATTTACACTCATAATGATCCGCTGAAGTTTGAATGTGACATTTGTGGGAAGTTCACATCTTCCCGAACCTCAATGGCTAAACATTTGGAAATCCATGGAGAAAAGAAATATATCTGTActacgTGCGGCTACAGCACGTTCACGGCGGAGGTGCTGAAGCGGCACTCGCTGACGCACGTGGCCGACAAGCCGCATAAGTGCGAGATCTGCGGCCAGTCCTACATCCAGCGCCAGCAGCTCATGCGCCACCTGGAGCGCCACGTCTCCAGCCACTGCAACACCTGCGGCCGCAAGTTCAACTCCAAAGCCAGATTACTTATTCATCAGCGCGTACATATGGGATTGGATCGCCTCGTTTGCCCATTCGATACATGCCCGAATTCAAGAAAGGAGTTCTCCAATGAAATCAGCCTTCATAACCATGTGCAGGGCCATTTGAACAAAAAGAAGTTCCCATGCGAGGTGTGCGGCAAAGAGTACTTCTCGGACGTGAACATGAAGCGCCACCTGTCCACGCACCGCCTGGACAAGCCGCGCCGCTGCATGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGGTGAGTGTGCACAAGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGGTGAGTGTGCACAAGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGGTGAGTGTGCACAAGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGGTGAGTGTGCACAAGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGCCGCCGCGTGTACTGCGTCACCGCGCGCGCCTACATCCGCGGCGAGCAGCTGGTGCGCCACGTGCGCCAGCACCACCCCGACCTGTTCAGCACGCACCTCGCGCACGTGCGCCAGGTCATGGGAACGAACTTGGCAATAGACCGAGTGAAGAAGTCTGAGCTGGAGTCGATCCTGAACCTGCTGGACGCGGAGTCGGAGCGCATCCTGGACGGCTACGGCGGCTCCGACGTGCTGTACGGCGGCATGCAGGAGGACCCCGCGCTCGCCGCGCCTTCTGGCGAGGTACCTGTCAAATCGGAGCCTTTCCCGCTTATGTCCGAAGAGCAACTTGAGAACAATTTGAAAAAGTTGCTGTCACAATTGATCGATCAAGATACTTTGGAATGCTTCGGATGGCCTGATGACAGCATCGATTCGGTGCTGGAGAAGGTGATTGTGCagtgcggcgcgcgcgcggcggaCCGCGGGCGCTGGTCGCGCGTGCAGTGCCTGCGCGAGAACACCAAGCACCTGTTCGTGTACGCGGTGGAGGACAAGCACATCGCGCGCATGCTCGACACGCACACCATCGACCAGATCGTCCTGCACATCCTCGCGCAGGTCGCCGACGACTGA
- Protein Sequence
- MRPIKSEVKEEIALGNEDIPVCTVCNSGPGRYCQCQQRLLDKIGPKRKAIIKCQKCPKIYKFKKRYLQHCLNEHSTTPGSVSCAQCSVTCPDKKVLAKHIEHTHNRKEFECPRCSKKFVRHAHVLRHLSQSGCNGSPAASYPCEICNSTFSRKDNLIVHLRYQHILNNGYACKLCEYGSKNFSKLVKHWIYTHNDPLKFECDICGKFTSSRTSMAKHLEIHGEKKYICTTCGYSTFTAEVLKRHSLTHVADKPHKCEICGQSYIQRQQLMRHLERHVSSHCNTCGRKFNSKARLLIHQRVHMGLDRLVCPFDTCPNSRKEFSNEISLHNHVQGHLNKKKFPCEVCGKEYFSDVNMKRHLSTHRLDKPRRCMYCVTARAYIRGEQLVRHVRQHHPDLFSTHLAHVRQVMLVRHVRQHHPDLFSTHLAHVRQVMVSVHKPPRVLRHRARLHPRRAAGAPRAPAPPRPVQHAPRARAPGHGECAQAAACTASPRAPTSAASSWCATCASTTPTCSARTSRTCARSCRRVYCVTARAYIRGEQLVRHVRQHHPDLFSTHLAHVRQVMVSVHKPPRVLRHRARLHPRRAAGAPRAPAPPRPVQHAPRARAPGHGECAQAAACTASPRAPTSAASSWCATCASTTPTCSARTSRTCARSCRRVYCVTARAYIRGEQLVRHVRQHHPDLFSTHLAHVRQVMGTNLAIDRVKKSELESILNLLDAESERILDGYGGSDVLYGGMQEDPALAAPSGEVPVKSEPFPLMSEEQLENNLKKLLSQLIDQDTLECFGWPDDSIDSVLEKVIVQCGARAADRGRWSRVQCLRENTKHLFVYAVEDKHIARMLDTHTIDQIVLHILAQVADD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -