Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979748.1:9527468-9531246[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00061 0.054 14.9 0.6 1 23 301 324 301 324 0.92

2 11 0.0081 0.72 11.4 2.0 1 19 345 363 345 367 0.90

3 11 3.9e-05 0.0035 18.6 3.8 2 23 373 394 372 394 0.97

4 11 0.1 9.2 7.9 3.3 1 19 398 416 398 421 0.89

5 11 0.057 5.1 8.7 0.3 1 23 424 446 424 446 0.96

6 11 0.0011 0.1 14.0 0.1 3 23 533 553 532 553 0.96

7 11 0.32 29 6.3 0.2 2 23 573 595 572 595 0.96

8 11 1.1e-06 0.0001 23.5 4.1 1 23 601 623 601 623 0.98

9 11 0.0046 0.41 12.1 3.0 2 23 629 650 628 650 0.96

10 11 0.00023 0.02 16.2 1.9 2 21 657 676 656 679 0.94

11 11 0.044 3.9 9.0 2.1 3 19 719 735 718 740 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00061	0.054	14.9	0.6	1	23	301	324	301	324	0.92
2	11	0.0081	0.72	11.4	2.0	1	19	345	363	345	367	0.90
3	11	3.9e-05	0.0035	18.6	3.8	2	23	373	394	372	394	0.97
4	11	0.1	9.2	7.9	3.3	1	19	398	416	398	421	0.89
5	11	0.057	5.1	8.7	0.3	1	23	424	446	424	446	0.96
6	11	0.0011	0.1	14.0	0.1	3	23	533	553	532	553	0.96
7	11	0.32	29	6.3	0.2	2	23	573	595	572	595	0.96
8	11	1.1e-06	0.0001	23.5	4.1	1	23	601	623	601	623	0.98
9	11	0.0046	0.41	12.1	3.0	2	23	629	650	628	650	0.96
10	11	0.00023	0.02	16.2	1.9	2	21	657	676	656	679	0.94
11	11	0.044	3.9	9.0	2.1	3	19	719	735	718	740	0.92

Sequence Information

Coding Sequence: ATGGACCAAGCGAACATAACGATGTCGGAGTCCGACATCATGTATCCAGTGCTTCTCATCCCGAAGAAGTGTACCACGTTGGAAACGAGCTGTGAGGTGACGGACAACGTATTTATCGACTTGAACATTACGTCGCAAGACACGGAAGGTAACGAAATGTGTATCTACACCGGTTTTTGTAACGTGAAACTTATAGATAGTTATGATGTTAACGTTCATCATGTTGAATCCCCAACGGAAGATTCGGGATTCGAACATGATCAACTTGCGCAGATTGAATCGGGCAACCAGATAACGTATCCGTACAATCAGTCCCAGGTATGGATCGACCCGGTGAGGAGCCCGTACGTATACAACCAGTATGACGCAACCGAGACTCAGGAGTACTCCGTGTGTCGCCAGACAAGGTCTGGGCATATAACCGTCGAACAACGTAACACGTACATCACTCAGAACGTGTACAATTACAAGGAATCCATACACTACTCGCCGGTCGAGGATTTTGAGCATAAGAAGTTCAGGAAGATACCGGCGGAGAATGTCCAGCCGAGTACTTCTGATGCGGGCAATTTGAATTTGTACGAGGAGGATGAGTTCGAGTGTGGGGTGTTCCTCTCTCACTTGCCTGAGGAGATAATGAATGAGAAGGAGACTAAGGCGAGGGAGGAGCGCAAATACATCGGGATTCAGAGCGAGAACGGGGCTCTGAAACAGCTGATGTCGTCGGATATCCAGTCAGTGTCGAAGCAACGAAAGACCATCTTGTTCCTGGGCCACGACTCGCACTGTGGACAGACGATTCAGAAGATAGCAGTTAATGACCCGACCCTGATCTGTTCTGGGACTGGGGAGGTCGATCATGAAGTTGTTATTGATAATGTGAATCCCCACCAGAAGAAATATCAGTGCGACAAGTGCAAGCAGATATTTGACCAGATATCTGCTTTCAAGCAGCACATGGTGGGCAGCCACAGAACGCCCCGGTCTTCTTCGCTCGACATGGACTCGTCCAGTCCTGGCAGCGAAGTGAAGTTCATGTGCAGTGAATGTGGCAAGAGTCTGAAGAACCAAGAGAAGTTCGAGCTCCACTGCATGGGCCATGGGGACCCTGAACTAGAGTGCAACAAGTGTCACAAAGTCTTCGCGTCAAAGTTCACCCTTCGCACTCATAGGAAAATCCACTCTCGGAAGCACGCCTGCCAACATTGCAGCAAAACCTACGCTGATATCGAGGACTTGAGGTCCCATTGCGCTAAAGTTCACTACATCTTCATGTGCGTCTACTGCGATTTTGTCGCCAATAAGTTGACCAATCTGAAAATGCATGAAGAAATGCATAAAAATCAGCAGTTCACTAAAGAAGAGAGCGACGATGATTTCACTGAGTCCCTGATAGATGAGGTCATCAGTGACACTGACATCATGGCGCCTTCTCCAGGGGACGATGAAGACTTCAAAATTGAAAGCGACATACTAGACGAGTGCACGAATGACGAAATACAAAAGGCTGATTCTGTTATTGCGAAAGTTATGTCcaataagatttttttgttgcacGCCAAAAAAGCCAAGAGACACAGGAGATACAATAAGGCCTGCGACGTCTGCCTGAAAGTATTCGACCGCGTCGGCGACCTGAAGAGGCACTTAATCGAGCACATCATCCGCAGCACCCTCGCCAAGACCCCCGTCAGCAGAAACGGCACCCTCAACATCCAGTGCGAGGTCTGCCAGGTCGAGACCTTCACCAAAGTCGACAGGTACAAAGCACACCTCCGCGAACACGCAAAACTCACCCTCTACAAATGCACATTCTGCGACAAATCCTTCAGCGACTCCTCGAACTTCTccaaacacaaaaaaatacacGGCACCAAATACCTCCAGTGCGATCTGTGCCACAGGAAATTCAACTCTAAAAAGATGATCACACTGCACATGGAGTACCACAATAAAAATGCTCCCGTCACGTGCCAATACTGTGATAAGGTGTTCTACTTTGAGTCTATGCTGAATAAACACATAAAATGTGCTCACACTAAACAGCTGTCGAATAGGTTCCGGTGCAGGTTCTGTCACGATTACTTCAAGACTCTGAAAGAGAAGTGGGACCACGAATGGACTGTCCACAACGTTAGAAAAATTATAGTGGACTGTCTAATTTGTGGGTCCAAGTTTCGGAAATATTCTGAGCTGAAAAAACATTGCATCAATGTCCATAATATGGCAATACCTCCCGCCAAGAAACTCTTGAGGAAGAAGAGATACAAGTAA
Protein Sequence: MDQANITMSESDIMYPVLLIPKKCTTLETSCEVTDNVFIDLNITSQDTEGNEMCIYTGFCNVKLIDSYDVNVHHVESPTEDSGFEHDQLAQIESGNQITYPYNQSQVWIDPVRSPYVYNQYDATETQEYSVCRQTRSGHITVEQRNTYITQNVYNYKESIHYSPVEDFEHKKFRKIPAENVQPSTSDAGNLNLYEEDEFECGVFLSHLPEEIMNEKETKAREERKYIGIQSENGALKQLMSSDIQSVSKQRKTILFLGHDSHCGQTIQKIAVNDPTLICSGTGEVDHEVVIDNVNPHQKKYQCDKCKQIFDQISAFKQHMVGSHRTPRSSSLDMDSSSPGSEVKFMCSECGKSLKNQEKFELHCMGHGDPELECNKCHKVFASKFTLRTHRKIHSRKHACQHCSKTYADIEDLRSHCAKVHYIFMCVYCDFVANKLTNLKMHEEMHKNQQFTKEESDDDFTESLIDEVISDTDIMAPSPGDDEDFKIESDILDECTNDEIQKADSVIAKVMSNKIFLLHAKKAKRHRRYNKACDVCLKVFDRVGDLKRHLIEHIIRSTLAKTPVSRNGTLNIQCEVCQVETFTKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTKYLQCDLCHRKFNSKKMITLHMEYHNKNAPVTCQYCDKVFYFESMLNKHIKCAHTKQLSNRFRCRFCHDYFKTLKEKWDHEWTVHNVRKIIVDCLICGSKFRKYSELKKHCINVHNMAIPPAKKLLRKKRYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00408719;
90% Identity: iTF_01124904;
80% Identity: -