Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979760.1:6952544-6954302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0066 0.59 11.6 0.4 2 23 207 229 206 229 0.94

2 9 9.9e-05 0.0088 17.4 0.4 1 22 234 255 234 257 0.90

3 9 0.00011 0.0096 17.3 2.2 3 23 262 282 260 282 0.94

4 9 5.1e-05 0.0046 18.3 1.0 1 20 286 305 286 307 0.95

5 9 3.8e-06 0.00034 21.8 1.7 1 23 323 346 323 346 0.96

6 9 0.071 6.3 8.4 0.8 1 23 352 374 352 374 0.95

7 9 1.9e-05 0.0017 19.6 2.4 1 23 380 402 380 402 0.98

8 9 1.2 1.1e+02 4.6 1.8 1 23 408 431 408 431 0.85

9 9 0.00019 0.017 16.5 3.5 2 23 437 458 436 458 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0066	0.59	11.6	0.4	2	23	207	229	206	229	0.94
2	9	9.9e-05	0.0088	17.4	0.4	1	22	234	255	234	257	0.90
3	9	0.00011	0.0096	17.3	2.2	3	23	262	282	260	282	0.94
4	9	5.1e-05	0.0046	18.3	1.0	1	20	286	305	286	307	0.95
5	9	3.8e-06	0.00034	21.8	1.7	1	23	323	346	323	346	0.96
6	9	0.071	6.3	8.4	0.8	1	23	352	374	352	374	0.95
7	9	1.9e-05	0.0017	19.6	2.4	1	23	380	402	380	402	0.98
8	9	1.2	1.1e+02	4.6	1.8	1	23	408	431	408	431	0.85
9	9	0.00019	0.017	16.5	3.5	2	23	437	458	436	458	0.97

Sequence Information

Coding Sequence: ATGACGACTTTAACCACTGCTTTGGATAATTTATTGAAGAGAAAAAATGACTTCTGTTGCTTGTGTTTAAACATAATTTACGAACAACCTATTCACGTTGAAGATGAAGTGGCAGTTAATATAAACCAAGAGGAAGTCAATGTATCGGTTTCTGAGCTTCTTTCAACTATCATTGGTGTGgagataaTAGACTACTTGCTAACTTTTGAGCACATTTGCACTCAGTGTGCACTAACAGCTATCCATAGCTATAGTTTTGCGAAAACCAGTAAAATCAACTCCGATTTACTGAAAAACTCCTTGAATGGGTTATATGATAGTTTTTCAAATGTTGAAGAGCAAGAAGCAATGAATGATTGCAATTCTTTGTTCGTATCTCTGAACACTGAGGACTTCACCAGCAGACAGTTCTACGATAACAAAAGACCGGTCCACACTGCCACCGCAGCACACAGGAGGTTCCGATCCATGGTTAATAGTCCAAAACTAAAACCGAAGTTAGAAGTCGAAGTATACCCTTTAGgcgttaaaaaagaaaaagttaagaAGCAAAGGGGTAGATTGTTGATACAAATACCAACAAATGAAATGCTTTATGATAACAAAGCTTCTGACATCCAGTGTAAAGAGTGTTTAAAAACGTACCCATCAAAACTGGGTTTACGTAACCATTTTATTCGTGTTCATGCACCAAAGACATACAAATGTTCCAAATGCCCGAAAAGGTTTGGATCACCAGCCTATTTGGAGGCTCACAACTCTGAGAGCCATTCTCTTATTATTTGCAGTCAATGTGGAAAATcttttaacaataaacacacaTTTAAGATGCACGAAATGGGGCATTACTTGAGATTCGTTTGTCAAGATTGTGGCAGAGTGTATAAAAATAAGACAACGTTTAGGAAGCATAAAGAGCTAAACGTTTGCAGTCAACAAGTTAGAGCTTCGCCGGCAGATGCTAAGTTCACATGTGACTATTGCAATAAGAAATATACACAGAAAGTGTCTTTAAGAGTACACATACAGTACGAACACGGAAACTACAAGGCTCATGTGTGTGAACTCTGTAATAAAAAATTCTGGGCAATAAGTCGATTAAAAGCACACATGGTCAAGCACACTAAAGAGAAAAACTTTTCATGTAAAGAGTGTAATAAAAAGTTTGTGACGAGAGAATCTTTGTTATATCATACACGTTTACACACTGGAGATAAACCTTACGAGTGCTCTCATTGTAACGCCAGGTTTCTTTCAGCCTCACGGAGATCGGAACATGTGAAAAAACAACACACGGATGCAACTTTGGAGTGTAACGTGTGCGGAAGTAAATTCAGTTCTCAGAATTATTTGCATAAACATAAAAAGACACATGACAATGAATTCAATTCAACACTCGAGCCAGAAGTCAGTAAACCAGTCCGTACACAGAAAGTCAATACGTCCGATTTCAAACAACTTACCCAAGACTTAATGAAAATGGAAAGTGAAGAATATGGTTTTGAAAGTGGTAATATTCCTGAAGAATCTTGTCTTAAAATGAAGTTACTAAATACTGATGATGAATATATTGtagaaatgtatgaaaactag
Protein Sequence: MTTLTTALDNLLKRKNDFCCLCLNIIYEQPIHVEDEVAVNINQEEVNVSVSELLSTIIGVEIIDYLLTFEHICTQCALTAIHSYSFAKTSKINSDLLKNSLNGLYDSFSNVEEQEAMNDCNSLFVSLNTEDFTSRQFYDNKRPVHTATAAHRRFRSMVNSPKLKPKLEVEVYPLGVKKEKVKKQRGRLLIQIPTNEMLYDNKASDIQCKECLKTYPSKLGLRNHFIRVHAPKTYKCSKCPKRFGSPAYLEAHNSESHSLIICSQCGKSFNNKHTFKMHEMGHYLRFVCQDCGRVYKNKTTFRKHKELNVCSQQVRASPADAKFTCDYCNKKYTQKVSLRVHIQYEHGNYKAHVCELCNKKFWAISRLKAHMVKHTKEKNFSCKECNKKFVTRESLLYHTRLHTGDKPYECSHCNARFLSASRRSEHVKKQHTDATLECNVCGSKFSSQNYLHKHKKTHDNEFNSTLEPEVSKPVRTQKVNTSDFKQLTQDLMKMESEEYGFESGNIPEESCLKMKLLNTDDEYIVEMYEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01124892;
90% Identity: iTF_01124892;
80% Identity: -