Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979750.1:1948240-1964996[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 1.1 10.8 3.8 1 23 430 452 430 452 0.98

2 10 0.00047 0.042 15.2 2.2 2 23 460 481 459 481 0.95

3 10 0.0044 0.4 12.2 1.9 1 23 512 535 512 535 0.97

4 10 0.014 1.2 10.6 0.3 1 23 539 562 539 562 0.95

5 10 0.019 1.7 10.2 0.2 3 21 580 598 579 603 0.91

6 10 5e-05 0.0044 18.3 1.9 3 23 613 634 613 634 0.98

7 10 0.048 4.3 8.9 0.3 3 23 655 676 654 676 0.98

8 10 2.7e-06 0.00025 22.3 0.8 1 23 687 709 687 709 0.99

9 10 6.2e-06 0.00056 21.2 1.2 1 23 715 737 715 737 0.99

10 10 0.0045 0.41 12.1 0.1 1 21 743 763 743 764 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	1.1	10.8	3.8	1	23	430	452	430	452	0.98
2	10	0.00047	0.042	15.2	2.2	2	23	460	481	459	481	0.95
3	10	0.0044	0.4	12.2	1.9	1	23	512	535	512	535	0.97
4	10	0.014	1.2	10.6	0.3	1	23	539	562	539	562	0.95
5	10	0.019	1.7	10.2	0.2	3	21	580	598	579	603	0.91
6	10	5e-05	0.0044	18.3	1.9	3	23	613	634	613	634	0.98
7	10	0.048	4.3	8.9	0.3	3	23	655	676	654	676	0.98
8	10	2.7e-06	0.00025	22.3	0.8	1	23	687	709	687	709	0.99
9	10	6.2e-06	0.00056	21.2	1.2	1	23	715	737	715	737	0.99
10	10	0.0045	0.41	12.1	0.1	1	21	743	763	743	764	0.95

Sequence Information

Coding Sequence: ATGGAGCAAGTGAAAACCTTGACTTCAATGGATCTTCCGCCTTACGCTTGTTTCGAATGTGCCGCGTTGATCACAAAGACCTACCATTTCAGAGAGAAATGTATGTGGGGTCAAACAGCTCTTTACAACATTATCAATTCCATTGGCATGGTAACAGAACGAAGCGTAAAACAACTTAATAGACATGAATTAAATTTAGTTTCTAGTCTTTCATGTCAAAGTATTTGTATGGATAATACAATAAATATAGCGAGTGAAGAGTCGGAGTTATTAGCTATAAAACATGAACTGACTAATGAAGATGCAGTGGATGATGAACAAAAGTATAATTTGGACTTAGGTTTCTTCAAGCATGAGATCAGTGGTGATGATATCAGATTCtccagtgatgatgatgatgaaccattGGTGTTACAcaaaagaaataaacaaaaggCCACCAAAAGCAAAGGGAAGAAAAAGAAAGCAGATAAACAAATACTTGAAGTGGATTTAGAAGATAGTGCTGAATTTGAGTTACCGCTTGACGATCAACTAGATCCACCACCAGAGTCACCATTGCCTCGGTCGAGGGGTCGCCCCAAGAAGGATCCATCCAAAATTAAGCCTAAAGCGGCACGCGGACGGCGAACTGCTAACACAGGCGGGGTGCCGGGAGATGATAGCAACATGGAGGAGTACGTCAACATTATCACGCTCTCCGTAAGTGTAATGATACTAGTCGCATCACAGATGCGTCGGTCGAGCGGTCGCCCTAAGAAGGATCCATCCAAAATTAAGCCTAAAGCGGCGCGCGGTCGGTCGAGCGGTCGACCTAGGAAGGATCTTTCAGCCAAAGTGAAAGCTAAAGCGGCGCGCGGACGGCGAACTGCTAACACAGGCGGGGTGCCGGGAGATGACAGCAACATGAGGGAGTACGTCAACATCATCACGCTCTCCGATCCATCCAAAATTAAACCAAAAGCGGCGCGCGGACGGCGAACGGCTAACACAGGCGGGGTGCCGAGAAATGATAGCAGCATGGAGGAGTACGTCAACATCAGCACGCTCTCCGTAAGTGTAATAATACAGTGGCAACACCGTTGCGTCGGTCGAGGGGTCGCCCTAGGAAGGATCCATCCAAAATTAAGCCTAAAGCGGCGCGCGTTCGGCGGACTGCTAACACAGGCGATGCCGGGATATGATAGCACTATGGAGGAGTATGTCAACATCATCACGCTCTCCAGAGAAGAACAGTTTCAGGAGATAGAAAACCGCAAGACCTCGTCCAACTATCTGAACTCGGTGTTCAAGTGCGAGCATTGCTACAAGGGCTTCATAGACggcaaggcttggaagcatcaCCTGTCGCGACACGAGCCCAAACCAGGTGACGTGGAGTGCGAGATTTGCAAATTCCGCTTCAAGAGCAAGCGCCACCTGTCCAAACACGTGGCCCTTCACGAGAAGAAATACGCCTGCAAGGCCTGCCCCTACGTCTCCAAGTGCACAACTCAAGCGAAACAGCATCAAAGATGGCACAAAGGCGTCACGTACAAATGTCAGCACTGCGATGAAATATTGTCCAAATGGACGTCGTACCTGAGCCACGTGCGGCTGAAGCACCCGTCGGAGTTCATCTGCGGCTCGTGCGGGTACTCCTTCGTCAGCCGGCTCGGGCTCAGCATGCACCGCACCATGATGCACAAGGACGCCGAACCAGAAGAAGCTGAAGGTGATAGCACTGAAGGCGGTTACTGTGCGCTTTGTGATGTCAAATTCTCGTCAATGGAGGCCTACCGCCGGCACATGGTCACCTCGGCCAAGCACACGCAGGACCAGGACTTTAAGAACGGCTGTCGCGAGTGCGGCGAGACGTTCACCAGCGAGGAACAACTCCGCGCGCACCACCGCCGCCAACACGCGCGCAAGCGGCCCAAGAACTACGGCAAGAAGCCCTGCCCATTCACCTTCCCTACGCTCTGTCCTCACTGCCCGGAGACAATAGAGAATGCGCGGGACTACTGGTCGCACTTCAGGCGCGTGCACCCCGACCAGCCCTACCCCATCCAGAAGAACTACGTCTGCGACATCTGCGGGAAGAGCTTCCGGGGCAACGCGTTCCTAACATACCACAAGCGGACGCACTCCGAAGAGCGCATGTACAAGTGTGCGCAGTGCCCGAAGGCCTTCTACAACCGCACCAACCTCCAGCTGCATGAGAAGACGCACTCCGACACGCGGCCCTATCCATGCTCCGTCTGCTTCAAGGCCTTCAAGGCCAAAGGCGCCCTGGACCGCCACTTTAGGGTAACTATACTGACACGACACTAA
Protein Sequence: MEQVKTLTSMDLPPYACFECAALITKTYHFREKCMWGQTALYNIINSIGMVTERSVKQLNRHELNLVSSLSCQSICMDNTINIASEESELLAIKHELTNEDAVDDEQKYNLDLGFFKHEISGDDIRFSSDDDDEPLVLHKRNKQKATKSKGKKKKADKQILEVDLEDSAEFELPLDDQLDPPPESPLPRSRGRPKKDPSKIKPKAARGRRTANTGGVPGDDSNMEEYVNIITLSVSVMILVASQMRRSSGRPKKDPSKIKPKAARGRSSGRPRKDLSAKVKAKAARGRRTANTGGVPGDDSNMREYVNIITLSDPSKIKPKAARGRRTANTGGVPRNDSSMEEYVNISTLSVSVIIQWQHRCVGRGVALGRIHPKLSLKRRAFGGLLTQAMPGYDSTMEEYVNIITLSREEQFQEIENRKTSSNYLNSVFKCEHCYKGFIDGKAWKHHLSRHEPKPGDVECEICKFRFKSKRHLSKHVALHEKKYACKACPYVSKCTTQAKQHQRWHKGVTYKCQHCDEILSKWTSYLSHVRLKHPSEFICGSCGYSFVSRLGLSMHRTMMHKDAEPEEAEGDSTEGGYCALCDVKFSSMEAYRRHMVTSAKHTQDQDFKNGCRECGETFTSEEQLRAHHRRQHARKRPKNYGKKPCPFTFPTLCPHCPETIENARDYWSHFRRVHPDQPYPIQKNYVCDICGKSFRGNAFLTYHKRTHSEERMYKCAQCPKAFYNRTNLQLHEKTHSDTRPYPCSVCFKAFKAKGALDRHFRVTILTRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -