Onub030252.2
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979762.1:7370874-7394389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 1.2 10.7 2.4 1 23 229 251 229 251 0.97 2 11 0.01 0.91 11.0 8.0 1 23 258 281 258 281 0.97 3 11 0.00028 0.025 16.0 2.9 1 23 312 335 312 335 0.98 4 11 0.033 3 9.4 1.0 1 23 371 394 371 394 0.95 5 11 0.019 1.7 10.2 0.1 3 22 409 428 408 432 0.93 6 11 8.2 7.4e+02 1.9 1.0 3 23 442 461 441 461 0.79 7 11 2.7e-05 0.0024 19.1 0.2 3 23 484 505 483 505 0.96 8 11 5e-06 0.00045 21.5 1.8 2 23 515 536 514 536 0.97 9 11 2.2e-05 0.002 19.4 2.1 1 23 542 564 542 564 0.97 10 11 8.8e-06 0.00079 20.7 1.6 1 23 570 592 570 592 0.96 11 11 6.6e-05 0.0059 17.9 1.0 1 23 598 621 598 621 0.97
Sequence Information
- Coding Sequence
- atgagcAATATTAAAGTTTGCAGAATATGTTTAGGTCACAATACCCCTATGTACACGGTAACCGCTACAAATTTACACGAGTTTTACGAGAAAAATACGAATAAACCACTCAAAACTGACGAAGAACTGTCCGTAGCATGCTACATCTGCTACCATTTGCTGAAGAAGTGTTACAGATTCATACAATGCGCAATAAAAGCAAACGAAGTGCTACAGAAAATATCGAATGACGGGACTGAGATAACAGAAAAAGCCATAGCGCTCATAGACAAGCCCCATTCATTTCGAATTTTCCAAAACACTCCAATTGATTGCGTGGTTTCTACGGAAGTCGAAGAGAATATTGAGGTGCCGATTGTGAAAGACGAACACTTAGATATTAAAAGAGAACCGGCCTTAGACACAACGTCATTGGCAGAGGATGAAAAAGATATTATAgAGCCACCGCTACCAGACGATTCCCAAAGCTTCACGGACTCGGAGGACGATGTGCCTCTAAAATGCATCAGCAGGAAGACTGAAACACAGGTCAAGAATAAACGACCTACTAAGGCTATAAGACcgattaaaaaagttaaaaaggCCCCAGCTCTCATCGATGCTCGCGAGATAGTCCTATCTCTAGAAGAACAGCGAGCTCAGTTGCTCGCGCGAGCTCAATCGCTCAACTACTTGCATTCGCCGCACCGCTGTACTTTATGCTACAAGGGATTTGTAGATCTGAAGGCATATGAGAACCACAAGGAGAAGCATGACGAGCGTAGCGGCCCCTTCGAGTGCGAGATATGTCGCATGCGCTACCGCACGTCGAGACACCTCCGCACACACGTGCACACGTGTCATGGCCGCCAGTACGCGTGCAACAAATGCGCGCACCGCTCGCACACCGCTAATCAAGCTAGAGAGCACGAGAAATGGCACAACGGATACACTTATGAGTGTCAGCTGTGCAGTCAAAAGTTCAGGAAACCCACCTCATACCTCACGCACATGCGGAAGCGACACCCGACGGAGCACGTGTGCAATATATGCGGCGACAGCTTCGTGGGACGCCACGGACTGAAACCCACCTCATACCTCACGCACATGCGCAAGCGACACCCGACGGAGCACGTGTGCAATATATGCGGCGACAGCTTCGTGGGACGCCACGGGCTGTTGATGCATAAGAGTAAAGCGCATCGGTTGCAGGAGAAGCCCACTCCAGAGCAAGAACCAAAGTTTTGTGCGGACTGCAACATACAGTTCGTGTCTTTGGACGCTTGGAAACGCCACATCATGAGCTCAGCCAAGCATGCGGTGGCCACTGATGCTAGCACTTTGTGTCACGCGTGCGACACGCGCGTCCCGGGCTCAAAGCTGCGCGAGCATTTGCGCTCGCACGAGGCTGAGCGCGAGCGCGCGCCGCCGAACACCGCCGCGAATGttcgcgccgcgccgcgcgctcCCTGCTCTCAGTGCGGAGCAAACTTCGTGAACCGCTCGAAGCTGCAGGCGCATATAAAGAGGATCCATTTGGGAGTCAAATACAACAAAAACATCGTCTGCGAAGTGTGCGGGAAGAAGTGCACCTCCAACGCCTCGCTAAAGTACCACCAGCGTACTCACACGGGCGAGCGGCCGTTCGCCTGTTCACACTGCGGGAAGCGATTCGCCGACAACAACCAGCGGCGGATACACGTGCGgaCACATACCGGCGAGCGACCGTATTGCTGCGCGGCGTGTGGAAAGAGATTCAGCCAGAAACCAGCGCTTAACAGGCACTACCGGGTACACACGGGGGCGAAGCCCTACGACTGCCAGTTCTGCGCGAAGACCTTCAGCCAGTCCAACTCTCTGAAGCTCCACGTTAATACTGTACACTTGAAGATACCACGCGCGGTCAAGAAACAACCCGCGGCGGCTGATGCTTAG
- Protein Sequence
- MSNIKVCRICLGHNTPMYTVTATNLHEFYEKNTNKPLKTDEELSVACYICYHLLKKCYRFIQCAIKANEVLQKISNDGTEITEKAIALIDKPHSFRIFQNTPIDCVVSTEVEENIEVPIVKDEHLDIKREPALDTTSLAEDEKDIIEPPLPDDSQSFTDSEDDVPLKCISRKTETQVKNKRPTKAIRPIKKVKKAPALIDAREIVLSLEEQRAQLLARAQSLNYLHSPHRCTLCYKGFVDLKAYENHKEKHDERSGPFECEICRMRYRTSRHLRTHVHTCHGRQYACNKCAHRSHTANQAREHEKWHNGYTYECQLCSQKFRKPTSYLTHMRKRHPTEHVCNICGDSFVGRHGLKPTSYLTHMRKRHPTEHVCNICGDSFVGRHGLLMHKSKAHRLQEKPTPEQEPKFCADCNIQFVSLDAWKRHIMSSAKHAVATDASTLCHACDTRVPGSKLREHLRSHEAERERAPPNTAANVRAAPRAPCSQCGANFVNRSKLQAHIKRIHLGVKYNKNIVCEVCGKKCTSNASLKYHQRTHTGERPFACSHCGKRFADNNQRRIHVRTHTGERPYCCAACGKRFSQKPALNRHYRVHTGAKPYDCQFCAKTFSQSNSLKLHVNTVHLKIPRAVKKQPAAADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124859;
- 90% Identity
- iTF_01124859;
- 80% Identity
- -