Onub030180.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979762.1:6331432-6356875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00065 0.058 14.8 1.6 1 23 255 277 255 277 0.98 2 12 0.0037 0.33 12.4 0.5 2 23 285 307 284 307 0.94 3 12 1.4 1.2e+02 4.3 1.8 1 23 311 333 311 333 0.94 4 12 0.03 2.7 9.6 5.7 1 23 338 360 338 361 0.96 5 12 0.0067 0.6 11.6 0.2 3 23 368 389 366 389 0.96 6 12 0.044 3.9 9.0 0.8 2 21 403 422 402 423 0.94 7 12 7e-05 0.0063 17.8 0.7 3 23 435 455 434 455 0.96 8 12 0.11 10 7.7 0.2 2 23 468 490 467 490 0.94 9 12 1.8e-05 0.0016 19.7 0.5 3 23 713 733 712 733 0.97 10 12 1.2e-05 0.0011 20.3 0.9 1 23 739 761 739 761 0.99 11 12 4.4e-07 4e-05 24.8 1.2 2 23 768 789 767 789 0.98 12 12 1.2e-05 0.001 20.3 1.4 1 23 795 818 795 818 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAACACTGGCATGCCGTCTGTGTTTATCAACAAGCGTTAAACTGTACGATATGTTCAATTATCGTCTAAATTCAGCCTACGAGACCCTAACTGGAGTAGAGATGAGCGCCTCCGATGGGTTACCACCATACTCCTGCGGTGTGTGTAGCGCGCTGCTACTCAAGAGTGCGACCTTTAAGCGCATGTGCAACAACTCTTACGACCTTCTCAACATTGCTAAGCTTCAGCAAGTGCTATCATCAGATtacataaaaagcctaaaaaTAACGCCTCTTTTCTCATTCACAATCAAAAACACCGATGTTATATCCATCGGTGTCGAGACCGACGAAGTTGTCAAAAAGGAGGAAGATTGGGAGGTCCAAATCGACCACAAAGTGAAAACAGAATCTAGAGAATCATCCATAGACTCGGATCGAGATGAACCAATAAGCGAACTGTTTAAACGTACAAGAATACTAGTCGAAAGTCTCCCACGAAAAGTAACCAGAAGTAAAACAGCAGCGAAAACTCAGCGTGccaaaaaaactgttttagaaAAGACGAAGAAAGTTATAAAAGAAAAACCGCCGAAGAAAGGTGTGAAAGAGAAAAAAGAGAGCAAAGTCAAGACGGAAAAGGTGAAAAAGCAAAAAGAGAAAGAGACAGGCTATGAGTTCCCGGATGGTGAAGTGGAGGTATTGATGTTAAGTAAAGAAGAACAGTTAGAAGAGATACACGCAAGGAAATCATCGGTGAATTACTTGAGTTCGTTCTATAAGTGCGAGCTGTGTTTCAAAGGCTTTATTTCAGAGACAACGTACAAAAATCATATGGTTAGACATGACCCTAGCAGTGGCGCCCTCTCGTGCGAGATATGCCACATCCGAGTGGCGAACAACAAGTTATTACGCTCCCATATGATCCAACTACATGAAAGAAAATATGTTTGCAAGCTATGCAACAACGTCTCCAAGTCTAAACACTCAGCTTCTGAGCATTCAAAGTGGCATAGCGGTCAGAAGTTCACATGCAAGTTTTGCGATGCTGTATTTTCAAAAAAGACAAGTCATCTGTCCCACATGCGAATCCACCACCCTTCGGAACATGTCAATTGCGATGTTTGTGGCGAAGCTttcatagGAGAACATGGGTTGCGGATGCATAAGAAAAAGGCACACAAAAATATGGACACGAAAACAGAACCGGAATCAGAAACCCGATGTACAAACTGCAAAGTGCAGTTCCAGAATGCAGACGCTTTCAAACGACACACTAACAACGCTAACGGACTGTGCGATGTCAATTTCAGGTACTGCGCGAAATGCGGCGAGAGCTTCAGCACAGAACTGGACCTTAAGAAGCATTTGAAGCAGCACGCCAAGGAGGAGCGGAAGATGAAGAAGAAAGTCGTCAGGTGTGAGGAGTGTAATCTAACATTCGGCGTGGCGCGCTCGTACTCGCTCCACTACCAACAAGTGCACCTCCGCCTGCCTCCAGCGACCTACCCCTGCTTGTCGCGGCCGGCGCTGGCTATATGCGACGTCTGCGGCAAGAAGTGCTCGCTCGTACTCGCTCCACTACCAACAAGTGCACCTCCGCCTGCCTCCAGCGACCTATCCTTGCTTGTCGCGGCCGGCGCTGGCTATATGCGACGTCTGCGGCAAGAAATGCTCAAAAGAGATTTGCCGCCACTAAATGGCTACCACCTATCTAGATGGCGCCCTTATAAGTTTTTTGGCGCCCGTAAATATGATATAGGCGCCTCTCTATCGAGTAACCGTCAGTGGCCAAAAGATGGCAGGGCGTGGCGCGCTCGTACTCGCTCCACTACCAACAAGTGCACCTCCGCCTGCCTCCAGCGACCTACCCCTGCCTGTCGCGGCCGGCGCTGGCTATATGCGACGTGTGCGGGAAGAAATGCTCGAGGAAAATTTGGCGCCACAAACCATCTAGATGGCGCCCTTATAAGGTGTTTTGGCGCCCGTAAATGTGGTATAGGCGCCTCGCTAGCTAGTCACTACCAGTGGATGAGCCCCAGTAGTCGGCAAGGCGTCGCATATAGCTCGTACTCGCTGCACTACCAACAAGTGCACCTCCGCCTGCCTCCAGCGACCTACCCCTGCCTGTCGCGGCCGGCGCTGGCTATATGCGACGTCTGCGGCAAGAAATGCTCGTCGGCGGCGGCGCTCCGTAACCACTTACGGATACACACGGGCGAGCTTCCATTCCAGTGCAGCGAGTGCCCCAAGCGGTTCCGAGTCAACGAGCGGTTGCAGATCCACCGTCGCATCCACACAGGAGAGCGGCCGGTTAAATGCAGTTACTGCCCCAAGGCCTTCCGGCACAAAGCACAGCTCATCAGACATGTTCGAGTGCACACAGGAGAGAAGCCGTACCCTTGTGCACACTGCGGCAAGTCTTTCTCTTTGAACTACACGCGGAAGGCGCACATACGCACTGTGCATATGGGCTTACCTAGCGGGGCAGGGGGCCCCTTACCGGATGTTTTTTATGGCGCCCCTCCAAGTTTGTAA
- Protein Sequence
- MEETLACRLCLSTSVKLYDMFNYRLNSAYETLTGVEMSASDGLPPYSCGVCSALLLKSATFKRMCNNSYDLLNIAKLQQVLSSDYIKSLKITPLFSFTIKNTDVISIGVETDEVVKKEEDWEVQIDHKVKTESRESSIDSDRDEPISELFKRTRILVESLPRKVTRSKTAAKTQRAKKTVLEKTKKVIKEKPPKKGVKEKKESKVKTEKVKKQKEKETGYEFPDGEVEVLMLSKEEQLEEIHARKSSVNYLSSFYKCELCFKGFISETTYKNHMVRHDPSSGALSCEICHIRVANNKLLRSHMIQLHERKYVCKLCNNVSKSKHSASEHSKWHSGQKFTCKFCDAVFSKKTSHLSHMRIHHPSEHVNCDVCGEAFIGEHGLRMHKKKAHKNMDTKTEPESETRCTNCKVQFQNADAFKRHTNNANGLCDVNFRYCAKCGESFSTELDLKKHLKQHAKEERKMKKKVVRCEECNLTFGVARSYSLHYQQVHLRLPPATYPCLSRPALAICDVCGKKCSLVLAPLPTSAPPPASSDLSLLVAAGAGYMRRLRQEMLKRDLPPLNGYHLSRWRPYKFFGARKYDIGASLSSNRQWPKDGRAWRARTRSTTNKCTSACLQRPTPACRGRRWLYATCAGRNARGKFGATNHLDGALIRCFGARKCGIGASLASHYQWMSPSSRQGVAYSSYSLHYQQVHLRLPPATYPCLSRPALAICDVCGKKCSSAAALRNHLRIHTGELPFQCSECPKRFRVNERLQIHRRIHTGERPVKCSYCPKAFRHKAQLIRHVRVHTGEKPYPCAHCGKSFSLNYTRKAHIRTVHMGLPSGAGGPLPDVFYGAPPSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -