Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979762.1:773941-792150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00034 0.031 15.7 3.9 1 23 89 111 89 111 0.98

2 13 3.4e-06 0.00031 22.0 3.1 1 23 117 140 117 140 0.96

3 13 0.0067 0.6 11.6 1.4 1 23 148 171 148 171 0.93

4 13 0.00012 0.011 17.1 1.0 2 23 178 199 177 199 0.96

5 13 0.00012 0.011 17.1 1.0 2 23 223 244 222 244 0.96

6 13 0.0026 0.23 12.9 0.6 1 23 250 274 250 274 0.93

7 13 4.9e-05 0.0044 18.3 0.2 2 23 280 301 279 301 0.96

8 13 0.00055 0.049 15.0 1.1 3 23 311 332 310 332 0.97

9 13 0.51 46 5.7 0.4 1 23 339 362 339 362 0.95

10 13 0.00036 0.033 15.6 1.9 2 23 369 391 368 391 0.95

11 13 0.11 10 7.7 3.1 1 23 873 895 873 895 0.96

12 13 0.41 36 6.0 0.5 2 23 906 926 905 926 0.91

13 13 0.0037 0.33 12.4 0.9 1 23 1049 1071 1049 1071 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00034	0.031	15.7	3.9	1	23	89	111	89	111	0.98
2	13	3.4e-06	0.00031	22.0	3.1	1	23	117	140	117	140	0.96
3	13	0.0067	0.6	11.6	1.4	1	23	148	171	148	171	0.93
4	13	0.00012	0.011	17.1	1.0	2	23	178	199	177	199	0.96
5	13	0.00012	0.011	17.1	1.0	2	23	223	244	222	244	0.96
6	13	0.0026	0.23	12.9	0.6	1	23	250	274	250	274	0.93
7	13	4.9e-05	0.0044	18.3	0.2	2	23	280	301	279	301	0.96
8	13	0.00055	0.049	15.0	1.1	3	23	311	332	310	332	0.97
9	13	0.51	46	5.7	0.4	1	23	339	362	339	362	0.95
10	13	0.00036	0.033	15.6	1.9	2	23	369	391	368	391	0.95
11	13	0.11	10	7.7	3.1	1	23	873	895	873	895	0.96
12	13	0.41	36	6.0	0.5	2	23	906	926	905	926	0.91
13	13	0.0037	0.33	12.4	0.9	1	23	1049	1071	1049	1071	0.98

Sequence Information

Coding Sequence: atgACCCGTCGGGGGAcggcaggttatgtggggctcgaacccactacaaacctggggtgttccctctgccgcatagtggtcggcGCAACCAGAAACGACCAAGGCGCCTTCCGCGGACCCAACACGCCCCCACTTAATGAGGGGCCGACAGGATTAGCCGGGACCACGAGGCCAATCCCGTCCGACGGCGGTGGTAGCCTGTGCGTGCAATGCAGGAGGAGGCGCCACCACCAAGGGCAGGAAGAAGCGAACGATGAGAAACCGTTCAAGTGTGTGTTCTGCGACTACGCCTGCCGGGACAGTTCTACGCTACGAAAGCACCAAGAGAGGCACATGGGCATCAAGAAGTACCCTTGCGATATGTGTAACAAGAGATTCTATTCAAAGTATCACCTCACCGCTCATATGAAGGAGAATCATATAGCGCCAGAAGACCGGAATCACGCTTGCGACAAGTGTGAAGCTACCTTCAAAAACAAGCGAGGGCTGCTGACGCATAAGAACCTCGTCCACGAGCAGACCAAAGCGTGCATATGCAACGTGTGCGGTGTTCGCATACCCAACAAGTACAACCTGAGCTCGCATATGCGGACGCATATCAACGTGCGCCCGTACAAGTGTGCCTACGACGGGTGTAAAGCCAGCTTTAAGGATAAGGTGACGTGCATATGCAACGTCTGCGGGGTTCGCATACCCAACAAGTACAACCTGAGCTCGCATATGCGCACGCATATCAACGTGCGCCCGTACAAGTGCGCCTACGACGGGTGTAAGGCCAGCTTTAAAGATAAGGGAACTCTGAAGAAACATTCGGTAATTCACTTACCGCCTCAGTGGGTATGTGGATATTGTGGCAGAGGCTTCAGTAGACGGGTGCGACTGGTGAGACACATCAAGCTGCATGAAAAGCCTGGGGCAAAGACCGAAGCTTGCCAGTATTGTGGGGTGAGATTCCTCACCAAGAACTACCTGACCAAGCACATCCGCACCAAACACGCGAAGGACAGACAGAAGTATATTTGCGATATGTGCGACTTCGTGACGCACAACAAGCCGAGTATAGTGATGCATATCAAGTACGGACATAACTATGATAATAAGACTGAATGCAAAATATGTGGCAAAATATACAAAAGCAAGACTTTCCTGAAACTACACTACAAGAATACACACAACGTGTCTATGAAAACCAAATTGAAGACCCTGCCCAATATACAGATAAAAGAAGAGCCGATGGATCCCGTTCCTGATTTGGAGATAGATTTGCTGGACATTGAAAAAGAGGAACCATTCACAGgtTACGACGCAGAATACACCGATAGCATGTCAGCGTTCGACAAGGAAGAGAACGAACGGCGTTTGCGTGTACTGTTCAAGAAGATGATACACGATCCGGATTTAGAAGAACACGATGATGGAATTACGGACCAAATCGACTCAGCCAAGGAGGAGAATAAAACTGAAGACACTCCTGACTCTCCAAAGAACACTAAAATGCCATTTGAAGACACTCCACAGAACACCATGATACCACTTGAAGACACTCCGCAGAACACTACAATTCCATTTGAGGACACTCCGCAGAACACCACAATACCATCTGAAGACACTCTGCAGAACACAGCAATGTTACTTGAAGACACTCCAATGAAGACCGCAATACCTCTTGTAGACATTCAGCAGAACACAGCAATACCATTTGAACACACTCAACAGAACACCACAATACCACTTGAAGATACTCCACAAAATGCCACGATGCCATTTGAGAACTCTCCGCAGAATTCCACAATACCATTTGAAGACACTCTAAAGAATGCTACGATGCCATTTGAAGACATTCCGCAGAACACCTCGATGTCATTTGAAGACATTCCTCAGAACACAGCCATGCCACTGGAGGAGTTGATCCAGCAAGATACGCTGCTATTGGTTGTAGGGGACGGACAGAAAACTTTACAGGAACAAGAATCATCTAAAAACATGCTAGAAGAAGAAATTCCACCTGAAACTCCAGAAACCGTTTCTATGATGGAAGAAATGAAGCAAATGGACGAAGAAGAAAAAACTGAACAATCGACGCCGACGCCTGAGGATGATGaCTCAACAGAATCGACTGAAATGGCCGAGAACCGAACCGAAGACCCGCCTGGTCCCATGCCAGTCGAGGAGTTCATCCAACAAGTCATGGGGGACATGGAAGACCCAcagcaagaagaagaagatgACACGTACACTCTAGACAAGGAATCCGAGGAGTTCGTAAGGAATCGCATTCGAGAACTGTTGACGAACCAACGGATCTTGGACCGCGAGTCGCGTATTGGTTTCGGACGGAGGACGCTTAAAAGGATCTCACGAGATGAAATGGAGACATCCCAAATAAAACCACGAGTAACTCGAGCCGTCGAACCAAACACTGAAAACATTATCtcagaaataaaaaacaaagaaaaacagGCCAGAAAAGAGGCAAGAAAGGCCAGAagagaagaaaataaaataaaaaagaaaagaaaacgcAAAACTAAAGTCAAGAGTGACAAGGATAGCAAGAGTGGAGAGAAAAAGACggaaatgaataataaatacgaTCCCAAATTGATCTTTAATATGTTCCAGtgtaatgtttgttttaagCTGTTCCAAACCAAACCTGAACTAATGGAGCATTGTCAAACTCACTTTGACGTATGCAGCGACACAATGCTCATGAAATGTCCCCTCTGTGACTACGTCACGGAAAGAAACATACGAAAACACATGAAAACAGTACACAAGGAAGACGTCAAGATATCCTTTTTAAGTATACTCGATCGAAAAGAGACAACAAATAACTCTAGGTATTATTACGAGACAAAAAATGATAATGCAAAAGAACTGGATATCATACCTAgtatcaaaattttgaataagaaAGCTGGGATGGATTTGGATAGGAAGAACagagaaataaagaaaaaatctaTGTCTACTTCTAAATTGGTTAAAAAAGGGAAAGAATGGATTGTGGAGACGCAAAAATTCGATGTATCAGGTTATGTTTTGCCTAATTCGAGTGAGTTGGATAAAAATGATGTAGATTATTTGAAGAAGTTAAAGAAATTGGGGATTGAAGCGAAGAGGAAAGGCGTTAAAATGTTGTACCCCTGTAATAAATGTGAAAAAGTATGCCAAAATCTGAGTGCGGTGACTTTGCATGGCCGAACTCATGATCcgaataaaaaaccttttaggCCTAAAGTATGGAAACACAAGACAAATAACTCTAATGATAATGCCAATGCTGAGAAAAATGAAGATGTGactgcaaaaataaataatcgaaCGGCGAAGCCTAAGCCGATCGTAAATAAACACAAATGCGACCCAAAACTGAaggatttttatgagaaaaatattAGAGGCTTGAATATAGAATTTTGGCAGTTTTTGAAGATTTTCAACAAGATGGAGCGAGAAAAGATAAATGATTTtgacgatttgaaaaattctacaGAGTATGGCATTGGACATGTTAACTATTTATATGATAGCCCAAGTAACAGTCAAACTGATAATAAtacagaaaaagaaataaatatcaaaGATAATAAGCTAAAAAATACCAATATGGcggctaataaaaataaaaaactcagTGTTACCAGTAGAAATAATTCAAAAGTTGCCAGCAAAGCTAAGTTTACAAGGACGATTAGATTAAGCAGATTTGAGCATAATAGAAGGATGGAATTGCAGAAGAAATTGAGGGAGAAAATAGCTAATACAGAAAATACTGAAGACTAG
Protein Sequence: MTRRGTAGYVGLEPTTNLGCSLCRIVVGATRNDQGAFRGPNTPPLNEGPTGLAGTTRPIPSDGGGSLCVQCRRRRHHQGQEEANDEKPFKCVFCDYACRDSSTLRKHQERHMGIKKYPCDMCNKRFYSKYHLTAHMKENHIAPEDRNHACDKCEATFKNKRGLLTHKNLVHEQTKACICNVCGVRIPNKYNLSSHMRTHINVRPYKCAYDGCKASFKDKVTCICNVCGVRIPNKYNLSSHMRTHINVRPYKCAYDGCKASFKDKGTLKKHSVIHLPPQWVCGYCGRGFSRRVRLVRHIKLHEKPGAKTEACQYCGVRFLTKNYLTKHIRTKHAKDRQKYICDMCDFVTHNKPSIVMHIKYGHNYDNKTECKICGKIYKSKTFLKLHYKNTHNVSMKTKLKTLPNIQIKEEPMDPVPDLEIDLLDIEKEEPFTGYDAEYTDSMSAFDKEENERRLRVLFKKMIHDPDLEEHDDGITDQIDSAKEENKTEDTPDSPKNTKMPFEDTPQNTMIPLEDTPQNTTIPFEDTPQNTTIPSEDTLQNTAMLLEDTPMKTAIPLVDIQQNTAIPFEHTQQNTTIPLEDTPQNATMPFENSPQNSTIPFEDTLKNATMPFEDIPQNTSMSFEDIPQNTAMPLEELIQQDTLLLVVGDGQKTLQEQESSKNMLEEEIPPETPETVSMMEEMKQMDEEEKTEQSTPTPEDDDSTESTEMAENRTEDPPGPMPVEEFIQQVMGDMEDPQQEEEDDTYTLDKESEEFVRNRIRELLTNQRILDRESRIGFGRRTLKRISRDEMETSQIKPRVTRAVEPNTENIISEIKNKEKQARKEARKARREENKIKKKRKRKTKVKSDKDSKSGEKKTEMNNKYDPKLIFNMFQCNVCFKLFQTKPELMEHCQTHFDVCSDTMLMKCPLCDYVTERNIRKHMKTVHKEDVKISFLSILDRKETTNNSRYYYETKNDNAKELDIIPSIKILNKKAGMDLDRKNREIKKKSMSTSKLVKKGKEWIVETQKFDVSGYVLPNSSELDKNDVDYLKKLKKLGIEAKRKGVKMLYPCNKCEKVCQNLSAVTLHGRTHDPNKKPFRPKVWKHKTNNSNDNANAEKNEDVTAKINNRTAKPKPIVNKHKCDPKLKDFYEKNIRGLNIEFWQFLKIFNKMEREKINDFDDLKNSTEYGIGHVNYLYDSPSNSQTDNNTEKEINIKDNKLKNTNMAANKNKKLSVTSRNNSKVASKAKFTRTIRLSRFEHNRRMELQKKLREKIANTENTED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -