Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979764.1:2639996-2642321[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.071 6.3 8.4 0.2 1 21 53 73 53 74 0.94

2 16 0.0093 0.84 11.2 1.9 3 23 103 123 102 123 0.95

3 16 0.024 2.2 9.9 0.8 2 23 146 167 145 167 0.97

4 16 0.0055 0.49 11.9 0.2 1 23 171 193 171 193 0.95

5 16 0.078 7 8.3 0.1 1 10 198 207 198 221 0.83

6 16 3.1 2.7e+02 3.2 0.1 3 23 229 250 227 250 0.83

7 16 0.0089 0.8 11.2 0.9 1 23 257 280 257 280 0.97

8 16 2.8e-06 0.00025 22.3 2.1 2 23 288 309 287 309 0.97

9 16 0.018 1.6 10.2 6.2 1 23 315 337 315 337 0.96

10 16 0.013 1.1 10.8 0.3 1 22 417 438 417 440 0.88

11 16 9.4 8.4e+02 1.7 0.7 2 23 467 489 466 489 0.89

12 16 0.033 2.9 9.5 0.3 2 23 512 533 511 533 0.97

13 16 6.1e-07 5.5e-05 24.3 1.0 1 23 537 559 537 559 0.98

14 16 0.048 4.3 8.9 0.7 1 20 593 612 593 616 0.87

15 16 0.012 1.1 10.8 0.2 1 23 623 646 623 646 0.93

16 16 2.2e-05 0.0019 19.5 2.2 1 23 653 675 653 675 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.071	6.3	8.4	0.2	1	21	53	73	53	74	0.94
2	16	0.0093	0.84	11.2	1.9	3	23	103	123	102	123	0.95
3	16	0.024	2.2	9.9	0.8	2	23	146	167	145	167	0.97
4	16	0.0055	0.49	11.9	0.2	1	23	171	193	171	193	0.95
5	16	0.078	7	8.3	0.1	1	10	198	207	198	221	0.83
6	16	3.1	2.7e+02	3.2	0.1	3	23	229	250	227	250	0.83
7	16	0.0089	0.8	11.2	0.9	1	23	257	280	257	280	0.97
8	16	2.8e-06	0.00025	22.3	2.1	2	23	288	309	287	309	0.97
9	16	0.018	1.6	10.2	6.2	1	23	315	337	315	337	0.96
10	16	0.013	1.1	10.8	0.3	1	22	417	438	417	440	0.88
11	16	9.4	8.4e+02	1.7	0.7	2	23	467	489	466	489	0.89
12	16	0.033	2.9	9.5	0.3	2	23	512	533	511	533	0.97
13	16	6.1e-07	5.5e-05	24.3	1.0	1	23	537	559	537	559	0.98
14	16	0.048	4.3	8.9	0.7	1	20	593	612	593	616	0.87
15	16	0.012	1.1	10.8	0.2	1	23	623	646	623	646	0.93
16	16	2.2e-05	0.0019	19.5	2.2	1	23	653	675	653	675	0.97

Sequence Information

Coding Sequence: ATGGAAAATATACCTAACCGCCTAGAGAATAGTGTGCCAGAGAAACGACGCTACCAAAGGAGCGCCAGGGGGCAAGCTCGCGTCATAATAAAGAGGAACGCCAGCATCATCCTTAATAGTTGGACAGTATGTCCTTTCAGATGGAAAAACAGCAGATTCATGTGTGCGTACTGTGATACTGATTTCTCGGAATTCAAACCACTCAGAGATCACGTGAGGTTGTGCACTTCAAAACATACCGTAAAAGATATATACCGCAAATACAAAGAATTGCCTCAGATTAACATCGATGTTACCGACGCTCACTGCAACATTTGTTCGGCTTCGTTCACTGACGTCAGTCATATGCGAGAACATGTTATTCAACACGATCGCACCTTTGACCCCAATCATCCTGACGGGGTGTTGCCGTTCTACCTCAATAAAGAATCGTGGAAATGCGTGTTATGCCAAGCTTACTTCACCACGTTCCTCAAACTGTACAAACACATGAACGTGCATTACCAGCATTACATTTGTGCCACTTGTGGAAAAGGGTATATGACAGCGACAAGGTTAAGAAAACATTCCGAAGTTCACATTTCTGGATCGTTTCCATGCAACGAATGTGGGAAGGTGTTCTTGATGCGCGCAAGTAGAGATGCTCACAAGGCCCGCGCGCATGCGAAAGGCCCTCGTTACGGTTGTCCCTATTGCAGCCTACGATTTGATGGTTACTACGTTAGGATGGCCCATTTGAACGAGGCACATCGAGAAAAGAAAGTGATATACAACTGTTCTCTCTGCGAAGCTACTTTTAAGACAAGTGCGAAACGATCGTTGCATTTAAAAACGGTTCATTTTCCTCGCCAAAAAGATGTTAAATGCCTGTTGTGTGGAAAGCGGTTCAGCTCGAGCAAACAATTGAAAAGTCACATGTTCACACATACTGGGAAAAAGGAACACCATTGCAACGTTTGTGGAAAAGATTTCTCTTCCAAAGCAGGGCACAGTAGGCATATGAAACAGCATGAAGTATTCATTTgTTCCGCTAATGCGGACTCGGGAGCAAACGTAAGCGTTGTGAAACGCGTAGTGCGAAAGCTAAAGGAGAATGTTAGCGAGCGACAGATGCGCAGGCGACGGCGCGCTAACAACGAACTGCCAGAGGAATCTGAAAAACGCATCGGAAAAACTATGATGCGACGAAATGCTATGACACTTCTAGAATGTTCTACTGCATGGGCTTTCAGGTGGTTTCATGGTGTTTTTTATTGCTCGTACTGCGATGAAAAGTTTGTTGATATGGTTCCCTTAAAAGAACACGTTTTCGCAAGTCACTCAAATGAGCCGCCCACTAAACGATTATTTGCAAAGATAACAGAAAATAATATGCTCAAGATTGACATTGGAAATCTTTCCTGTAGGCTCTGTGATAATTATGTAGAAGGCTTCGATGCACTGAAAAACCATTTGCTGTCATGTCATGGAAGAGCGCTGAATTCTGACTACAGTGATGGTGTGCTACCATTCAAATTGGGAAACGGTGGAATTCAATGTCAGATTTGCTATGCACAGTTCGAATCCTTCCCTAAAGTGAATCAACATATGAACACCCATTACCCGAACTATGTATGTGATGAGTGTGGGAAACCCTTTTCGTCTAAATCTCGTTTCCGCAGACACGTGCAATCACACGAAGTCGGCAAGTTTCCCTGTGGAGAGTGTGAAATCATATTTCTCACTAGAGTCGAGAGAATGTGCCACAAattgaaaatacataaaaaagggtATCGATACTCCTGCCCGAGGTGCTCGGAATCGTTCACGAGTTACTATGCTAGAGGCAAACATCTAGTGGATCGTCATGGACAACAGAAAATAGACTACGACTGTCCAGCTTGCGGTAAAACGTTTGAAACGGGTTCAAAACGTGCTGCACATTTCAGATTAACGCACGGGAATATAGGGAAAAAGTTTGACTGCAATGAATGTACTTCAACATTTAATAGCAAATCAAAACTTCAGAGACATCTTTTGACTCATATGAAGAAAGAAACTCAAAAATAA
Protein Sequence: MENIPNRLENSVPEKRRYQRSARGQARVIIKRNASIILNSWTVCPFRWKNSRFMCAYCDTDFSEFKPLRDHVRLCTSKHTVKDIYRKYKELPQINIDVTDAHCNICSASFTDVSHMREHVIQHDRTFDPNHPDGVLPFYLNKESWKCVLCQAYFTTFLKLYKHMNVHYQHYICATCGKGYMTATRLRKHSEVHISGSFPCNECGKVFLMRASRDAHKARAHAKGPRYGCPYCSLRFDGYYVRMAHLNEAHREKKVIYNCSLCEATFKTSAKRSLHLKTVHFPRQKDVKCLLCGKRFSSSKQLKSHMFTHTGKKEHHCNVCGKDFSSKAGHSRHMKQHEVFICSANADSGANVSVVKRVVRKLKENVSERQMRRRRRANNELPEESEKRIGKTMMRRNAMTLLECSTAWAFRWFHGVFYCSYCDEKFVDMVPLKEHVFASHSNEPPTKRLFAKITENNMLKIDIGNLSCRLCDNYVEGFDALKNHLLSCHGRALNSDYSDGVLPFKLGNGGIQCQICYAQFESFPKVNQHMNTHYPNYVCDECGKPFSSKSRFRRHVQSHEVGKFPCGECEIIFLTRVERMCHKLKIHKKGYRYSCPRCSESFTSYYARGKHLVDRHGQQKIDYDCPACGKTFETGSKRAAHFRLTHGNIGKKFDCNECTSTFNSKSKLQRHLLTHMKKETQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -