Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979744.1:7252979-7267961[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00046 0.041 15.3 0.2 2 23 138 159 137 159 0.93

2 10 0.00052 0.047 15.1 2.0 1 23 165 187 165 187 0.96

3 10 0.00013 0.011 17.0 0.1 1 23 275 297 275 297 0.98

4 10 0.00069 0.062 14.7 0.0 3 23 375 396 373 396 0.90

5 10 0.0026 0.24 12.9 0.2 1 23 411 433 411 433 0.93

6 10 1.1e-05 0.00098 20.4 0.2 1 23 461 483 461 483 0.98

7 10 0.00071 0.064 14.7 0.2 1 23 489 511 489 511 0.97

8 10 0.0004 0.036 15.5 0.3 1 23 517 539 517 540 0.95

9 10 0.031 2.8 9.5 1.1 1 23 553 575 553 575 0.96

10 10 0.0053 0.48 11.9 0.1 1 20 720 739 720 742 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00046	0.041	15.3	0.2	2	23	138	159	137	159	0.93
2	10	0.00052	0.047	15.1	2.0	1	23	165	187	165	187	0.96
3	10	0.00013	0.011	17.0	0.1	1	23	275	297	275	297	0.98
4	10	0.00069	0.062	14.7	0.0	3	23	375	396	373	396	0.90
5	10	0.0026	0.24	12.9	0.2	1	23	411	433	411	433	0.93
6	10	1.1e-05	0.00098	20.4	0.2	1	23	461	483	461	483	0.98
7	10	0.00071	0.064	14.7	0.2	1	23	489	511	489	511	0.97
8	10	0.0004	0.036	15.5	0.3	1	23	517	539	517	540	0.95
9	10	0.031	2.8	9.5	1.1	1	23	553	575	553	575	0.96
10	10	0.0053	0.48	11.9	0.1	1	20	720	739	720	742	0.93

Sequence Information

Coding Sequence: atggAGGGAGAAGAATTCAACCTCCATTGGGAGGAGGTCGAAGTTAAGcaTGGCATTGTTGAAGTCGAAGAAGAAGTGATATGCGGCCTCACAAGCCATGACACATCATATTCAAATgcgGGTCCAGGAGACATAATAGAAGAAAATGATCAGATGGCTGCAGAGAACTTGATGTATTTATCTCAAGATGTAGTGAACTACACAGAGACAGCGGAACTGGCTGACGATCCAAATGTAGAGTGTGTAACGGAAGAAGTCATCACTGATGACTGGGTCATACCTGGTGGGCAAGAGAGAGTGGAAGTTCCTTTGGATCATTTAACTAATCCAGTTTCAGACGCCAAAGAAGAAAATGATGTTGATGTTCCACTCCCTACTGACCAGGACGAGTACACAGCGATGCGTCCGTGGCCGTGCGACTTCTGCTCGCGGCGGTTCCGCAAGAAGGCGGCGCTGATGAACCACATGGTGGCCCACCAGAACGACAGGCCGCACGCGTGCAACCTGTGCGGCGTGCGATACGTTCGCAAGTGCGACCTCATCAACCACTTGAAAGTGCACGCGTTTGTGCCGGACAACCAGGATGTCATGGACTATGATGACATTATAGATACTCAAGTTACTACTAAACCAAAGAAGAAAAAAGGACGACGGAAAAAGAATCCAGAACCAGTAGAGAACGGCCTGTGGGAGAACATGACATCGGCTAGGACGCAGCAGTGGtcacggcgcgcgcgcacgccgcccaagccgccgccgacgccgccgtcgccgccgtcgccgccctcgccgccgccgccgcccgccgaccCCGCGCGACCTTTCGTCTGCCGACAGTGCGGCATCGGATTCGCTAGGGAGAAGGCTCTGCAGTCGCATGCGAGGGTGCACGGAGGCGACTCGCCGGTGGAGTGTGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGTCCACGCACGCGGCCGCGCGACACCCGCACCTGCCGCCGCGGCCCAGCCACGCCGCGCCCTACCAGGTGGACGACGAGGATGACGACATGGACTTCAAGCTGTCGCCGGCGGCGCACAGCGGCAGCGCCGAGCGCGTGTACGAGGCGGTGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGCGCCGCCACGTGGCCGCCGCGCACAGCTACAAACGCCACGATAGCACGAGTAGCGCGTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGAGTTGCACGGACGCGCTGCAGCTGCTAGCACACGCGGAGGGCCACGCCGAGCGCCACCACACCACTCCCAGATTAAAAAAACAGTCTCGAGGTCGAAATAACGTGTCTTCAAGTAGTTCAAGACAATTCCCATGTAGAGAATGTGGTAAAGTGTTCGGGTCGCGGAGCTCGCAGCAAATTCACATCCGAATTCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAGGCCTTCGCTGACGGCGGCACGCTGCGGAAGCACGAGCGTATACACACGGGCGAGAAGCCGTACGCGTGCGCCGTGTGCCCGCGCGCGTTCAACCAGCGCGTAGTGTTGCGCGAACACGTGCGCTCGCACCATTCCGCGCCCGACCGCCGCTCTAACGGTGCCCCTTCATATTGCTGCGTGGTGTGCGGGCGGAACCTACATTCCAGTGCGGACTTGGTGCAGCACCTCATACAACACTGCGACGCCAACACGGCGCTCAAGCGGCAACCACAGACTGGCCCACGGAAGTATAAGCGGAGACGGAAAATTAAGACCGAAGAGTCCACGCCACCTCGCGAATGGGAGCGCGGCTCCGAGTCCCCGGCGCGCTCGTCGCCCTCGCCGCGCGCCTCGCCCGCGCCCTCGCCCTCGCCGCCGCCCTCGCCGCCCCGCCGCCGCaagcgccgcgcgccgccgccgcggcccAAGATGATCCACACCGAGGACCCCCGGCCCCGGACCAAGCAGCAGGTCCGCCAGCGCCGGCCGCCGCGGCACCCGGCCGACGACTTGCGCGCCATCCGCCCGCGCTCGCCTGTGCCCTCGCCGGTACCTTCGCCTGTGCCCTCGCCCGCGCCGTCGCCCTCGCCGCCGCCCTcgtcgccgcccgcgcccgccgctgCCGGGCCCTTCAAGTGCGAGATGTGCTCGCTGGAATTCCCGCGCCGCGACGACCTGTTACTTCACGTGCCGGTGCACATATGA
Protein Sequence: MEGEEFNLHWEEVEVKHGIVEVEEEVICGLTSHDTSYSNAGPGDIIEENDQMAAENLMYLSQDVVNYTETAELADDPNVECVTEEVITDDWVIPGGQERVEVPLDHLTNPVSDAKEENDVDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLINHLKVHAFVPDNQDVMDYDDIIDTQVTTKPKKKKGRRKKNPEPVENGLWENMTSARTQQWSRRARTPPKPPPTPPSPPSPPSPPPPPADPARPFVCRQCGIGFAREKALQSHARVHGGDSPVECGECGELCWSREALSTHAAARHPHLPPRPSHAAPYQVDDEDDDMDFKLSPAAHSGSAERVYEAVRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSAWGEHTCDVCGESCTDALQLLAHAEGHAERHHTTPRLKKQSRGRNNVSSSSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRSNGAPSYCCVVCGRNLHSSADLVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKTEESTPPREWERGSESPARSSPSPRASPAPSPSPPPSPPRRRKRRAPPPRPKMIHTEDPRPRTKQQVRQRRPPRHPADDLRAIRPRSPVPSPVPSPVPSPAPSPSPPPSSPPAPAAAGPFKCEMCSLEFPRRDDLLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00075801;
90% Identity: -
80% Identity: -