Onub031375.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- ZFY_2
- Assembly
- GCA_963855985.1
- Location
- OY979764.1:6930592-6934010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00045 0.04 15.3 0.3 1 21 113 133 113 134 0.96 2 17 0.021 1.9 10.0 2.3 1 23 165 188 165 188 0.95 3 17 0.0012 0.1 14.0 0.5 2 23 194 215 193 215 0.95 4 17 5.3 4.7e+02 2.5 7.3 1 21 218 238 218 239 0.94 5 17 0.00028 0.025 16.0 1.2 1 23 257 280 257 280 0.95 6 17 5.3e-05 0.0048 18.2 1.1 1 23 286 308 286 308 0.97 7 17 1.7 1.5e+02 4.1 0.4 1 23 342 365 342 365 0.88 8 17 0.00045 0.041 15.3 3.7 2 19 493 510 492 513 0.92 9 17 3.7 3.3e+02 3.0 0.0 3 23 520 541 519 541 0.94 10 17 0.059 5.3 8.6 0.4 2 23 547 569 546 569 0.96 11 17 8.1e-05 0.0073 17.6 0.5 2 23 575 596 574 596 0.96 12 17 0.023 2.1 9.9 3.3 2 21 600 619 600 620 0.93 13 17 9.8e-07 8.8e-05 23.7 0.3 1 23 646 669 646 669 0.95 14 17 0.00036 0.032 15.6 0.5 1 23 675 697 675 697 0.95 15 17 0.25 22 6.7 0.1 1 23 703 725 703 725 0.96 16 17 0.021 1.9 10.1 0.3 1 23 731 754 731 754 0.93 17 17 0.0017 0.15 13.5 1.4 2 23 761 783 760 783 0.96
Sequence Information
- Coding Sequence
- ATGACGTCGTTTCAGGTGGCGGATGACAAGGAATTGCCGCCGGGACTGTGTCGCGATTGCTCGGAAAGCGCGCTCGCCGCGATCACCTTCCGGCAAGCCTGCATGGAATCCCACAACCAGTGGTCCCACGCCGCCGACTTCCTCACAAATATCCAAGACCCGACGGAGAACGATAAAGTGTACTACATATTCTACGGTGCGCAGGATAAGACTATTATCGGCGACCAGACGGAGTCCGCCGCGAGTACAGAGAAAGCGCTCTGCCGACTGAACTCCCATTTTCAGGATCCAATCGAAGTAAAGCCTAAGAAAGTCGAAAGAGCTCGCGGGCGTCCGTATAACTGCGCCGACTGTGGTAAGAAATTCAACGTCATATCGTTCCTGAATAACCACTTGCGGAATACCCTGAAACGAGCCTGCAACTTTTGCGGTGAGGTCGTACCGAAAGTTAAGTTGGCTGGGCATCTGAGCAGCGAACACGGGAAGTGTGTTTTCTCTTGCGGCAGCTGTCACCAAGTGTTTGACGACACGCAGCTACTTAATGCCCACCTTTTGAACTGTCACGGAGATTTTAAACTTCAGTGCAAAGTGTGCGGTGTGTGTTTCAACAGTGAAAGAGCTTTAAGCGCTCATGCGTACTCGCATTCCCTATTCCATTGTAGTTCCTGTGAGAAATGTTACGAGAACCGCAAGTGTTACATTTACCATCAAAAAGTATGCAACGCCCGGCGGACTAAAGCGAATAAAGCTGTGAACCGTTTTAATCGGTACGAATGTGACCACTGCGGCTCTACGTACACTAAAAAGCCATCTCTACGGATCCATATCATACAGAAACACTTGAACGTGTTGCCGTACGTTTGCGAGACTTGCGGGAAGCGTACATCGACGATTTCTCATCTAAGATCCCATGAGCTAGTCCATAAACTGCAAAGGCGGTTGTTTGTCTGTCATTGTGGAGCGAAAATGCGTACGGAACTAGGTTTCCACCTCCACCAGCGAATACACTCTGGTGAGAAGCCGTATGAGTGTGAAGAGTGCGGGGATAGGTTTCTGTCTGCTTCTAGAAGGTCCGATCATATCAAACGCAGGCACAGAAGCACTAAAGACATGCCGCACGGCTGTGAAGAATGCTCTGCTAGATTCATGGTAGAAGAGCAGTATGTGCCGGTCGGAATATGCGCCACATGCGCCGCGGCCGCACTGGCCGTCCAAGAGTTCCGAATGTTGACGCAAAGCTCGCTCAAACTCTGGTCAAAAGCAGTTGAAGCTCTCAACGAGATCCCCCAATCCTCTGCCCCTTCCGTGAAGTCTCTGTGCGCCTTTATCAAGTCTGATTCTCTAGCTGTACACACAGTCAAAGATTACACCGGTGGAGACACGAAAACTATGCTGAATCGGCTCAAGAATAGATTGAcgaagaaaaaacataatcctgACAAGAAACCACGCAGTCACCGATCTGGGCCGGCTTGCACGTGCCCAGACTGTGGAAAATCTTTCTACAGTCCGTATTATTTGTGCCTGCACTTCAGCAACAGCGGGCAGAAGGAAGCGTGCGCAACTTGCGGCGCCGTCGTCATCAGAGGTCGAGAAATGAAAGAACATCTATCCAAAGTGCATGGAGAAAGCGTTATCTCGTGCAAGCAGTGTCCGTTGCTGTTCACAAACGAGCTGCGGTTAGAGAAACACGTTAAAAAAGCGCACAAACTAGGTTCGTTGACTTGTGCGGATTGCGGACGAACGTTTCCGAGACAATCGTCGTTTGACACGCATTCTCAGATGCACGCGGTCAGGACTTGCCGGACTTGTGGCAAACAGTTCGCGAATCGCAGCTGCTACAGAGAGCACAGGTCGAAATGCGAACCGGACGCGAGGCCTGACACGCAATCGTTGCCGAGAAATAAACGATCGAATATACGCGATCCGGCGACATATACTTGTGATTACTGTGGAAAAACGTACACGTCTCGGCCCCAGCTCAAGAATCATATAATCTGGATACACATGGATGTGAGGCCTCATCAGTGCCAGTGGTGCGGAAAGAGGTTTTATACGCCCGCGCGTTTAGCCGAACATACAGTGGTGCATACTAGGGTTAGGAACTTTGAATGTGACATTTGCGGTGCTAAGTTAGTGTCTCGAATGGCTGCGGTATACCACAAACGGAGACATACCGGAGAAAAACCTTACAATTGTGAGGAGTGCGGAGAGAACTTCATATCAGCGTCAAGAAGATCGGAGCACGCTAAGAGACGCCACGGGAAGGGGCAGTTCGTGAAATGCATGCATTGTTCAGCCACTTTTGTCAGAGGATACGACTTGAAGAAACACATAGAGAAGTCGCATCGAATTAAAATTGACTCGGGAATACAAAAAATAACGATTGAAGTCCCGTCTATGGATGTAAAGGATATGCCCGATTTGGAAAACCCGTTGCGGAAGAGCTATAAAATGCGTTATTCTCCTGATACCCTCTCTTGA
- Protein Sequence
- MTSFQVADDKELPPGLCRDCSESALAAITFRQACMESHNQWSHAADFLTNIQDPTENDKVYYIFYGAQDKTIIGDQTESAASTEKALCRLNSHFQDPIEVKPKKVERARGRPYNCADCGKKFNVISFLNNHLRNTLKRACNFCGEVVPKVKLAGHLSSEHGKCVFSCGSCHQVFDDTQLLNAHLLNCHGDFKLQCKVCGVCFNSERALSAHAYSHSLFHCSSCEKCYENRKCYIYHQKVCNARRTKANKAVNRFNRYECDHCGSTYTKKPSLRIHIIQKHLNVLPYVCETCGKRTSTISHLRSHELVHKLQRRLFVCHCGAKMRTELGFHLHQRIHSGEKPYECEECGDRFLSASRRSDHIKRRHRSTKDMPHGCEECSARFMVEEQYVPVGICATCAAAALAVQEFRMLTQSSLKLWSKAVEALNEIPQSSAPSVKSLCAFIKSDSLAVHTVKDYTGGDTKTMLNRLKNRLTKKKHNPDKKPRSHRSGPACTCPDCGKSFYSPYYLCLHFSNSGQKEACATCGAVVIRGREMKEHLSKVHGESVISCKQCPLLFTNELRLEKHVKKAHKLGSLTCADCGRTFPRQSSFDTHSQMHAVRTCRTCGKQFANRSCYREHRSKCEPDARPDTQSLPRNKRSNIRDPATYTCDYCGKTYTSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSRMAAVYHKRRHTGEKPYNCEECGENFISASRRSEHAKRRHGKGQFVKCMHCSATFVRGYDLKKHIEKSHRIKIDSGIQKITIEVPSMDVKDMPDLENPLRKSYKMRYSPDTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -