Onub003414.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ostrinia nubilalis
Gene Symbol
L
Assembly
GCA_963855985.1
Location
OY979734.1:10417421-10422320[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5 1.3e+02 4.2 4.8 1 23 3 25 3 25 0.97
2 16 6.5e-07 5.9e-05 24.2 2.7 1 23 31 53 31 53 0.99
3 16 2.1e-05 0.0019 19.5 0.1 1 23 59 81 59 81 0.98
4 16 0.00068 0.061 14.7 0.0 2 23 97 119 96 119 0.95
5 16 6.2 5.6e+02 2.3 0.1 9 23 150 165 146 165 0.93
6 16 0.39 35 6.0 0.1 3 23 218 238 217 238 0.97
7 16 5.9 5.3e+02 2.4 0.0 2 20 252 270 251 271 0.86
8 16 0.00031 0.028 15.8 0.6 1 23 281 304 281 304 0.94
9 16 0.034 3 9.4 0.1 1 23 309 332 309 332 0.92
10 16 0.0066 0.59 11.6 0.2 1 23 390 414 390 415 0.94
11 16 0.0002 0.018 16.4 0.1 2 23 474 495 473 495 0.96
12 16 0.06 5.4 8.6 0.0 1 23 503 525 503 525 0.98
13 16 1.7 1.6e+02 4.0 0.7 2 23 533 554 532 555 0.93
14 16 0.9 81 4.9 0.3 1 23 629 651 629 651 0.94
15 16 0.0036 0.32 12.5 0.1 1 20 659 678 659 681 0.95
16 16 0.14 12 7.5 0.4 1 23 688 710 688 710 0.94

Sequence Information

Coding Sequence
ATGCCCTTTCGGTGCGAGTTCTGCGCGCGACTTTTCAAGCACAAACGCTCGCGCGATCGCCACGTGAAACTGCACACGGGTGACAGAAAGTACCGCTGCGCGCACTGCCCCGCTGCCTTCTCCAGGAGTGACCACCTGAAAATTCACATGAAGACGCACGACAACCAGAAGCCCTTCCAATGCAACGTCTGCAACCGCGGGTACAACACAGCAGCGGCGCTGACGTCACACATGCAGGGCCACAAGAGGGACCGCGAGGGCCGCGAGCCTGATCGACGCCGTGCGTTGCGTTGCCTCCGCTGTGGGGATGCTTTTAGGAGACCAGATTTGCTCCAGGCACATATGGCCAGTGCACATGGAGTAGAATCCCCCACCATGACTCCACCTCGGCGTGTAGCCTCGCAACCCCCGCCTGCACTCCTCGCGTGCATATACTGCACCCGCGACACTTTCACCAGCATGGAACAGCTGCAACTCCATGTCCGTGCTGCTCACTCCGCATTGCTGAACGGAGAAACGCCGGTGCAGACTGTTGATCAGCCTACACCCACAGATCTCAGTAGACGAGCACCAGATGAGGCACCTCCAGTGAAGAGACCGCGATCTGGGTCTGGGACTCCACAGACCGCATTGTCGCCGAGCACTCTTCTTTGCAACCAATGCGATGCGGCGCTACCAGATTTTGAAGCATTCCGAACGCATTTAAAAGGTCACCTTGAAGAAGGGGGCGAACTTGGACGGGCCAGTCCATCACCGTGTCTCCATTGTAGAGCCACCTTCGCGGATGCAGCAGCTTCTGAGCGCCACCTCGCGGCTTATTACCTGGCGGTGTCTTGCGAGTACACTTGCCACAGCTGCGCTCGAAGCTTCTCCGCTCCGGATGATCTCCAAAAGCATCTCCTCGACTTACATGCTCATCACTTGTACCGATGTTCGCTGTGCAAGGAGATATTCGATTCCAAAGTGGCTATTCAGGTACACTTCGCAGTTGCTCACAGCGGCGAGAACAAAGTATGGATGTGTAGGTCCTGCGGCGGCAACGCGGGTCCACTCCGCTCGGAAGCGGAGGGCGCCGCGCACGTGCGCTCGCGACACGCAGCCGCTAGATGCGCGTGCGGCGCAGTGCTAGGAGGCGCCGGCGCACGCCTCCCGCGGCCTCATCGCGCATATCGCTGCCCTGTACCCGCGTGCAATGATACTTTTGCTGTGCAGTACTTGCTGGAGCGGCATATGCAAGCTCATCATGCTTCACCACACCAGGCTATGAATGGCGACATCTCGCGAGTGAAGCGGCTGGAGAACAACAACGCTGCGGAGGGTGCGGACGGCGCCTGCTCCCCGTGTACTACGCTTGCTGATGGGAATGGCGTCGCGCCAGCGGGCGAGGAGCGGCGGCGCAAGAACGGTGCCGTGGCGCTGCAGTGTGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAATTAGAGGCGCATACTCGCGCGCATTCAGGGGCGGCGGCCGCGCGCCACAAGTGCCTCATCTGCGACGAGGTGCTGCCCTCTGCTGCCGTGCTAGCCGAGCACAAGCTCACTCACTGCAAGGTGGTTGCAGGAGACACGTGCGCGAGATGCCGCGCTCGGCTGCCGTCCGAAGAGTCATTCCTGACGCATATGGCTCGTCATCATCCGACGCTCCCCGCACCGTGCGTGGTCTGCCGACAAACCCTAGCGTCCGAGGCCGAGGCGCGCTTACACGCTCGCTTCCACTTGCGTCCAGCTGAGGATGAGCAGAGATGCGCGATTTGTCTCCGGGCGCTGACTGAATCAGAGGCAGGGGAGGGAGCGCGAGCGTGCTCTGCTTGCTACGCTCGCCATGCCAATCCACGACCACCTCCGCCAGCTGATCACGATTGCAGACTTTGTCGACGAGCACTGGGCTCTCCTACGCGACTGCAAGCGCATCTCATTGAACACACTTTCGCAGGCATAAGCGCGTTTACCTGCTACTTATGTTCGGCCGTGTTCACCAGCGCGGCTGGCCTCCAACGTCACCTCCCGGAACATGCCTCAGCACCTAAGCCATTCGACTGTGGACGATGCGGATTGAAGTTTTTCTTCCGCGCTGAACTGGACAACCACGCGTTCGTTCACTTGGAAGAAGCAGAGATTGCACAGAGAGCGTTTTATGAGGCTTATGCGCGGGGAGCCGCGTCCGCGTGGGCCGCTTTGGCTCCACCAGAGACGATTCAACCACCTCAAATTTCGGCGCCTGCTCCAGCTTTGCCCGAGGTCAAACGCGAGCCAGAAATAAAAGAAGAGCGTAACACAGATGAGTACATAGAGGTATCGTCTCCCCCGCCGCCCGCACCGCCCCCGCAGCCCCCGGCCCCCTCCCCTCCGCCCGTGGTGAAGCAAGAGAAGCCCGACGAAGACTGA
Protein Sequence
MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCNVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVESPTMTPPRRVASQPPPALLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPVQTVDQPTPTDLSRRAPDEAPPVKRPRSGSGTPQTALSPSTLLCNQCDAALPDFEAFRTHLKGHLEEGGELGRASPSPCLHCRATFADAAASERHLAAYYLAVSCEYTCHSCARSFSAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRSCGGNAGPLRSEAEGAAHVRSRHAAARCACGAVLGGAGARLPRPHRAYRCPVPACNDTFAVQYLLERHMQAHHASPHQAMNGDISRVKRLENNNAAEGADGACSPCTTLADGNGVAPAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTESEAGEGARACSACYARHANPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHASAPKPFDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPETIQPPQISAPAPALPEVKREPEIKEERNTDEYIEVSSPPPPAPPPQPPAPSPPPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00365139;
80% Identity
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