Onub031015.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979764.1:2921298-2923888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.038 3.4 9.2 0.2 1 23 33 55 33 55 0.97 2 18 0.0095 0.85 11.1 0.2 3 23 87 108 87 108 0.96 3 18 0.0042 0.38 12.2 1.9 2 23 131 152 131 153 0.95 4 18 0.0027 0.25 12.8 1.5 1 23 158 181 158 181 0.95 5 18 0.0074 0.67 11.5 0.6 1 23 186 209 186 209 0.91 6 18 0.0022 0.19 13.2 0.9 2 23 215 237 214 237 0.94 7 18 0.00086 0.077 14.4 0.2 2 23 245 267 244 267 0.97 8 18 0.13 12 7.5 0.0 2 23 274 295 273 295 0.95 9 18 1.4e-07 1.3e-05 26.3 1.1 1 23 301 323 301 323 0.97 10 18 0.00032 0.028 15.8 4.3 1 23 329 352 329 352 0.96 11 18 0.0088 0.79 11.2 0.4 2 23 510 532 509 532 0.95 12 18 0.0011 0.1 14.0 0.6 1 23 537 560 537 560 0.95 13 18 0.011 0.95 11.0 2.6 1 23 563 586 563 586 0.93 14 18 0.014 1.3 10.6 0.6 1 23 592 615 592 615 0.94 15 18 0.0013 0.12 13.8 0.4 2 23 623 645 622 645 0.96 16 18 0.00092 0.083 14.3 1.1 1 23 650 672 650 672 0.98 17 18 4.5e-05 0.004 18.5 0.3 1 23 678 700 678 700 0.97 18 18 0.0026 0.24 12.9 0.9 2 23 707 729 707 729 0.93
Sequence Information
- Coding Sequence
- ATGGAACTTGCCCGTAAGCTTCTTGTAAAGCGAAGAAACGTGGAATACGTGTTGCAATACGGGAACGTGACGCCCTTTATGTGGTACAAGGGGAAATATAGGTGCTTCTACTGTACTGAACCAATGAAAGACCCGGCAGCGCTGAGAGAACACACCTCTAACCACGAAACTTCAAACCTAGAGAATGTAGTCCATTTTAGAAcgaaaaacaacagaaataaggATGCGGCCATTAAAATTGACGTCACGGGCATCGGCTGTAAACTCTGTGACAAACCTGTCACGAATCTGGAGGAATTCATTCATCATTTAATCATAGCACATGACGCGGAATACGACGTCTCGGTCCCGAACTGTCTGTTGCCCTTTAAATTGGACAAAGATCAACCCACCTGTCCAACTTGTGATATGAAGTTCGTGTTCTTCGAATACCTTCTCCGTCACGCGAATAAGCACCATCTATCTCACGACTACATCTGTGACGTTTGCGGGACCAGCTTCCAAGGAGAAAACCACTTGAAGATGCACAATAGGTACTACCACAGGCAAGGTGGTTACACCTGCGACCACTGCGGTGTCAGTTTCGCTACGTTGGCCAAGAAAATCTTGCACGAAAAGAACGTGCATCAAGTGAACTTGTCCACGTGTCCCCACTGTCCGGAGATGTTCAAGAGTCCGTATTTCAAGAAGCTGCATATGGCGAATGTCCACGGCGTTGAAGAATTAAAGATCAAGTGTCCATTTTGCCCGAAAGTCTACCCTCAGGAGAGCATCATGTCTCGTCATATGCGACGAGTCCATCTCCGAGAGAAGAATGTGGAATGCGAAGTGTGCGGAGACAAATTCTTTGGTCCATATGACGTCAAATTGCACATGGTGAAACACAATGGCGACAAGAAATTTGTTTGTAGCGAATGCGGCAAGAAATTCGCCAAGAAAAGCAACCTGAATACACACATGTTTATTCACACTGGAGAAAAGAAGTTTGTGTGTGAGCATTGTAACAAATCATTCGCTCACATAACGAATTACAAAGTCCATGTTAAGAACCGACACGAGGGATATTTCAAAGCGAATGAAGAACTTAAAGGATTGAAAACGAAGCAACAGACAAAAAACGGCGGATTGAAAGAGAAGATCGTACGCGAGAATCGCTTGCAACGGCTCTGTAGGGTGAGGAGCAATATCCTGCTTGTTCTCCGCTATGGCAACGTAATGCCATTCAAGTGGCACACCAAAGGATTCAGCTGTTTCTTCTGCGCCAAACCCATGAAGGACTGCCTCGCTGTCAAAGAGCATACCTCCAAACACAGCTCCTTCGACCTAGAAAACTTCATTCCAAAGCTTGTCTCCAAAGATGTACCAGTAAAAATTGATGTCACTGATCTTGCTTGCAAACTCTGCCCCCAAATCCTGGTTCGAACAATCGACGAACTAGTAGCCCATATTGTCTCGATTCACGACGAAGACTACGACTACACCGCCGGCGTCTGCGTGCTACCATTCTTGCTGAACAAAGACGTGATGTCTTGCGTGCTCTGTGACAAACAGTTCGACAACTTCACTTCGATCATGTGGCATATGAATAAGGAGCATATATCCCATAGCCACATCTGCCAGATATGCGGTCTAAGTTTCATAAACATGATTCGGTTGAACAGGCATATAACCAGCAGTCATATAGGGTTTAGGTGCTCGCTTTGTAGCAAAGTTTTCGCGTCTTGCTACAAGCTGGATATCCACAAAGTCCGGTTGCACGGGCACGTGAAAAGTCATAGCTGCGACCTGTGCAGCGAATCCTTCGAGAACGGTTACCTAATGAAAGTGCATATGGGGAAAGTGCACAACGTCGCGAAGTACAGGATAAAGTGTGAGTATTGCCCGAAAATTTGCACAACCAAAGGGGCAATGGCGCTTCATGTGAAGTCCGTACACTCGGATGCGAGATTTGAATGCGACATTTGTGATTACAAGACTGTTACAAAATCTATGATTCAACTGCATAAAAGGAAGCATTTTGGGGAGAGGAACTACGCTTGTAGCGTATGTGAGAGGAAGTTTGGGAGGGCTAGCAACCTCAGTGCCCATTTTAAGGTGCACACAGGGCACATGGGCAGAGTCTGCAGGCATTGCAGACGTGGTTTTACTGACAATGAGGCGTTAGAGAGTCATAAGATGGAGGTACATTATTTTGATCAGGAGTGA
- Protein Sequence
- MELARKLLVKRRNVEYVLQYGNVTPFMWYKGKYRCFYCTEPMKDPAALREHTSNHETSNLENVVHFRTKNNRNKDAAIKIDVTGIGCKLCDKPVTNLEEFIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCDMKFVFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHNRYYHRQGGYTCDHCGVSFATLAKKILHEKNVHQVNLSTCPHCPEMFKSPYFKKLHMANVHGVEELKIKCPFCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSECGKKFAKKSNLNTHMFIHTGEKKFVCEHCNKSFAHITNYKVHVKNRHEGYFKANEELKGLKTKQQTKNGGLKEKIVRENRLQRLCRVRSNILLVLRYGNVMPFKWHTKGFSCFFCAKPMKDCLAVKEHTSKHSSFDLENFIPKLVSKDVPVKIDVTDLACKLCPQILVRTIDELVAHIVSIHDEDYDYTAGVCVLPFLLNKDVMSCVLCDKQFDNFTSIMWHMNKEHISHSHICQICGLSFINMIRLNRHITSSHIGFRCSLCSKVFASCYKLDIHKVRLHGHVKSHSCDLCSESFENGYLMKVHMGKVHNVAKYRIKCEYCPKICTTKGAMALHVKSVHSDARFECDICDYKTVTKSMIQLHKRKHFGERNYACSVCERKFGRASNLSAHFKVHTGHMGRVCRHCRRGFTDNEALESHKMEVHYFDQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -