Onub030985.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979764.1:2795079-2799707[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.66 60 5.3 1.1 1 23 247 270 247 270 0.94 2 18 0.032 2.9 9.5 5.0 1 23 336 358 336 358 0.98 3 18 0.0014 0.13 13.7 3.0 2 23 363 384 362 384 0.96 4 18 0.00028 0.025 15.9 0.2 1 23 389 412 389 412 0.96 5 18 2.2 2e+02 3.7 1.8 2 23 418 440 417 440 0.93 6 18 5.7e-05 0.0051 18.1 1.3 1 23 446 469 446 469 0.97 7 18 8.8e-06 0.00079 20.7 2.0 2 23 475 496 474 496 0.98 8 18 9.8e-07 8.8e-05 23.7 1.2 1 23 502 524 502 524 0.98 9 18 0.075 6.7 8.3 1.0 1 23 536 558 536 558 0.96 10 18 0.041 3.6 9.2 0.0 2 23 585 607 584 607 0.88 11 18 0.00028 0.026 15.9 2.0 2 23 634 655 633 655 0.96 12 18 0.00017 0.016 16.6 3.7 1 23 659 681 659 681 0.98 13 18 0.0071 0.64 11.5 2.3 3 23 688 709 686 709 0.96 14 18 0.0034 0.31 12.5 4.0 1 23 714 737 714 737 0.91 15 18 0.00048 0.043 15.2 0.1 1 23 744 767 744 767 0.97 16 18 0.00017 0.016 16.6 0.0 1 23 773 795 773 795 0.97 17 18 0.0018 0.16 13.4 2.8 1 23 801 823 801 823 0.98 18 18 0.0004 0.036 15.5 3.0 1 23 829 851 829 852 0.96
Sequence Information
- Coding Sequence
- atgGATTTAGAAAATATAAACAGCTGGGTCTCACAGCCAGATGTATGCAGGTGTTGCCTTTCGGCCAGCGGGACGTGGGATGTCACAGCTTCTTACATATCAGATTCGGGAATCAAGGAAGTGTATTTTGAAATGCTTCGAGATTGTTATGGCATTACTTTGTCCTATCTCTCGGAGTGGGGCCCGAGCCGGATGGTGTGCAAGCTGTGTGTGGGTCACCTGAGGGAGGCCTGCAGCTTCCGCGACCAGGTCAGGGCTGCGGAGAAACATTTTACGGAATACTGCAGCAGTAGAGATCATAACACTGGCATGGTGACAGTCAAATTAGAAGAAAATGTCAAAGCTAACAGTCCAGAAGCTGATGGTTTCAGTGATAGGGGAGTCCCATCTGAAGACGAAAACAATCGAATATCGCCTCCAGTTGTAAAACCTGAAAAAAGAATACAAAAGAGAAAGAGACAGAAAACAGATAAAGTGagacaaaagaaaaagaaaactaaaaCGGAATACGATTCAGATACGCCTATTGCCAACATGATAGATAAGAATGAACCTTCATGCAATGATAATAAGGCTGTGATTGGAAATGTAAAAGATGAAACTCCCAATGTTGAGAGGCCACCGCATACCGGGGCGAACGGTGCCAAGCACTTATCGGACCGGAAACGCGTCATGCTGACGTGTGACGTCGTCCTTAGACACACCACCGCGTGCCCCTTCCGTCACCACAAGAGCTGGTTCCAATGCTTCTTCTGCTCACAAGGATTCATGGAAATGAACCTCCTCAGAAACCACACCCTCCAAGATCACTCAAATGTAGactctgaaataaaaaaaataaaacgctaCCCGCGCTCCCTCCAAATCGACATTTCGAATTTAGAATGCCGCAACTGTCACTCGCCGATGACAGATGTCAACGAAATGCGCCGCCATCTTAGCGACGCGCACAGTAAAGTCATTTACAACGAGTGCATAGCCGATTATAAGGTTAACGCCAGTCCGTTTACGTGTCATATTTGCAAACAGGAGTTCCACGTGTTCCGAACTCTGACTACCCACATAAACGAGCATTACGCGAACTGTATTTGCGAGGTTTGCGGGAAATCGTTCCTTAATTCTAAGAGGCTTAAGGTTCACAAACGCACTCACGAATCTGGAAACTTCCCTTGTTCCGAATGTGGGAAGGTTTTGAAGACGAAGACTTCCCAAGCTAACCACATGGAGAGTGCTCACTCTAAGCGACAAATGAAGTGCCAGATCTGTTTTAAGCCCATGAAACATTATAATGAGAGGATCAAACACATGTCGGAAGTTCACAACATAACGCATAAGTTCAAATGTCCTATATGCGGTAGGGAGTACAATATAAAACATTATTTGGCGACTCACATACGCCAGACTCACGGGCATAAGAATAAAAAGTGCTCTGAGTGTGGCATGGCCTTTATTACGAATCATGGCTTGAAAAAGCATATGCTTAAACATTCAGGAGTCAAGCCGTTTTCTTGCAATGTCTGTAGTAAATCGTACGCGAGGAGTTATACTTTGAAAGAACACATGCGGGTTCACGATAATGACAGGAGGCATATAAACAACAGTAAATTCGCGTGCCTGTATTGTGAAAAGGGGTTTCTATTCTTCAAAGAATTGAAATCCCACATGGATTCCCACAGGAATATAACGGAAGAAGAGATTAACGTGTCTCTAAAAACTCCTAGAGATTTAATAAAGGCTGATCTAAGCGAAATATCCTGTACACTTTGTGGGGAAAACTTCAAAAACATCGACAGTGTTATAGAGCATTTGGTGGAAGTCCACAAAAAGATTTATCATCAGAACTTACGGATGAAACCTCCTCACGGAATTTTGGGTTTCGATCTTAGCTCCGAGCAGTTAAAGTGCAGTGTGTGTCAGAAACAGTTCAGGTTTTTCAAGAACCTATCTGTCCACATGAATGAGCATAGCACATGTTTTATGTGCCACGTGTGCGGCAAAAAATTCATATCGGACCATAGACTGCAGACGCACATAATGATGCACAAACGGACGAATATATTCTGCAAGCATTGCAACAAAGACTTTAAGACTGTGGCAGCAAGGAACTACCATATACGAAAGGAGCATAACGAAGCTCCATACAAATGTCCGGAGTGTTCTGAAAGTTTTACGCAGTACCATCACAGGTTGAAGCATTTGGTTGAGCGGCATAAGGTGAAGAAGCCGGAGTTTAAATGCGATATTTGTGGACGCGAGTTAGCTAGTTCTGGGGGACTTGCAGCCCATAAAAGGTATTCCCACTTGAAGACGGTTCAGTACCCTTGTGAAATATGTGGGAAAGTTTTCGCGTACAAATGGATATGGCAGAGGCATATGGATGTCCACACTGGTGCCAAAAACTTTGAGTGTAAGTTCTGTAATAAGAAATTCGCTAAGTCGTATTCACAGCAAATGCACGAAAGGATTCATATGAACGATAAAAGGTACGTCTGCGGAATATGTAAAGCCGCGTTTATACAGAAGTGCAGTTTGAAGAACCACACTAAAGTCCATCATCCGGAGGCTGATTTGAGCAAATTGTGA
- Protein Sequence
- MDLENINSWVSQPDVCRCCLSASGTWDVTASYISDSGIKEVYFEMLRDCYGITLSYLSEWGPSRMVCKLCVGHLREACSFRDQVRAAEKHFTEYCSSRDHNTGMVTVKLEENVKANSPEADGFSDRGVPSEDENNRISPPVVKPEKRIQKRKRQKTDKVRQKKKKTKTEYDSDTPIANMIDKNEPSCNDNKAVIGNVKDETPNVERPPHTGANGAKHLSDRKRVMLTCDVVLRHTTACPFRHHKSWFQCFFCSQGFMEMNLLRNHTLQDHSNVDSEIKKIKRYPRSLQIDISNLECRNCHSPMTDVNEMRRHLSDAHSKVIYNECIADYKVNASPFTCHICKQEFHVFRTLTTHINEHYANCICEVCGKSFLNSKRLKVHKRTHESGNFPCSECGKVLKTKTSQANHMESAHSKRQMKCQICFKPMKHYNERIKHMSEVHNITHKFKCPICGREYNIKHYLATHIRQTHGHKNKKCSECGMAFITNHGLKKHMLKHSGVKPFSCNVCSKSYARSYTLKEHMRVHDNDRRHINNSKFACLYCEKGFLFFKELKSHMDSHRNITEEEINVSLKTPRDLIKADLSEISCTLCGENFKNIDSVIEHLVEVHKKIYHQNLRMKPPHGILGFDLSSEQLKCSVCQKQFRFFKNLSVHMNEHSTCFMCHVCGKKFISDHRLQTHIMMHKRTNIFCKHCNKDFKTVAARNYHIRKEHNEAPYKCPECSESFTQYHHRLKHLVERHKVKKPEFKCDICGRELASSGGLAAHKRYSHLKTVQYPCEICGKVFAYKWIWQRHMDVHTGAKNFECKFCNKKFAKSYSQQMHERIHMNDKRYVCGICKAAFIQKCSLKNHTKVHHPEADLSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -