Onub025384.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979755.1:9562630-9574533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.0043 18.4 6.9 1 23 189 211 189 211 0.98 2 13 7.6e-07 6.8e-05 24.0 0.2 3 23 225 245 224 245 0.98 3 13 5.3e-05 0.0048 18.2 2.2 2 23 254 275 254 275 0.98 4 13 0.00036 0.032 15.6 2.1 1 23 281 303 281 303 0.98 5 13 4.5e-06 0.0004 21.6 1.1 1 23 309 331 309 331 0.98 6 13 1.9e-05 0.0017 19.6 8.4 2 23 338 359 337 359 0.97 7 13 1.4e-05 0.0012 20.1 0.7 1 23 365 387 365 387 0.98 8 13 1.4e-05 0.0013 20.0 1.4 1 23 393 415 393 415 0.98 9 13 0.00037 0.033 15.6 1.1 1 23 421 443 421 443 0.98 10 13 0.00054 0.049 15.0 1.8 1 23 449 471 449 471 0.96 11 13 0.00015 0.014 16.8 1.4 1 23 477 499 477 499 0.97 12 13 4.2e-05 0.0037 18.6 2.8 1 23 505 527 505 527 0.98 13 13 7.9e-05 0.0071 17.7 3.2 1 23 591 613 591 613 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCCCCTCGAACGCAGGTTTTGAAGTTCGACAAAATATGTCGGGCTTGTTTGCAGATAAAAAAGGACATGAGACCGCTCTTCGAGCAACTCACAGCTACCATGCTGATGGGCATATCTAAAGTGCAGGTATCGATGGGCGACGGTCTGCCCAACCAGCTGTGTCTCCAGTGCGTGCACCAGATCTCTCGCTGCCACGCCTTCAAGGAGCTGGTGGAGAGAAATGACGTCACGCTGCGGGAACAGGCCAAGGCTATGGCTGAGGAAGCGCTCAAGCTCGAGAGACAGGAGAAAGAAAAGATGCTGAATCTGACCTGCACAGAGCCTTTTATGCAGTACATGGAAGTGCCGATCATCAATTCCGACAGCCAGATCTTGGAAAACTTCTTCAGCACCGAAGAGACGGTCGTGCAGGAAGAAAAGGACGCGTTTAGCGATAAAGTGTTCATGCCAGAGCAACCAGCTCCAGTCCAGAAAGAAGACGAGCTCCTCAACTCGGACGAAGAATCGTACATGCAAATGGTGGTCTTCCAAGCCACGTCATCAGTGGCACCGGGCCGCCATGTTTGCAACCTCTGCCATAAGGAGTTCAAGCACGCGCGTTGGCTGAAGCAGCACATGCGATCGCACTCCAACTGGATCAAGGCCAATTGCAAGAAGCCGCCCATGTGCCCCATTTGCGATAGGACCTTCAAGGGTCCAGGAATGTTGAAGATGCACATGAGAACTCACGAGCAGCGGCCGCCAAAACAACCCACATGTTCGGTCTGTCAGCGAACGTTCGCCACCAAGACGCTGCTCTATCGCCACCGACAAACGCACTTCGAACAGAAAACGCACCAGTGCACTGTGTGCGAGAAAAGATTCTTTAGCGGCTACGCTTTACGGTCACATATGGCGCGGCATAGAGGAGAGCGGCCATATGTCTGTTCGATGTGCAATAAGAGCTTCTACAACCCTACAGATTTGAAGGTCCACTTCCGCCTGCACACGGGTGAGAAGCCCCTGAAATGTTCGGAGTGCAACAAGACCTTCCGCCGCCACTCAACTCTATGCCAGCACATGAAGAAACACCGCGGAATACGGAACCACGTGTGCTCGGTCTGCAACAAGGCATTCTACGAGGTCTCCAAGCTGAACGCACACATGCGTGTCCACACAGGCGAGCGGCCCTTCGAGTGTCAGTTCTGCGAGCGTAAGTTCGCGCAGCAATCAGCCCTGATCTACCATCGGCGTACGCACACGGGAGAGAAGCCTTACAGCTGCAAGCTTTGTTCGGCGCGCTTCACCACGTCTTCAGCTAGAAATAACCATATGGTCACTCATACTGGACATAAGAAGTTCGTCTGCCCAGTCTGTTACAAAGGCTGCACGTCTCGTTCGGAGCTGCGCGTGCATTCGACGAAACACACCGGCGAGAAGTTATTCGCGTGCGAACTCTGCTCGCAGCGGTTCAGTTCGGCGTCATATCTGGCTGTGCATCGCAGACATCATACCGGCGAAAGAAAGTATCACTGCAACGTGTGTGGGAAAGGTTACATAGAGTCAAATTCATACAAGAAGCACATGAAGACCCACGAAGTAAAGCCAGATTCGGAAGCTTCGACCAACTCTGAGAACAGCTCGGAGACTCAAGTTGCTGCAGCTGCTAAAAACGACAACGAAGCGGTCCAGGATGTCCAGGCCAATGTGACCATCGGCGAGGACCAGGAAGAATCGCAGACCCAAGAGCCTCAAACACAAGAGTCGCCTATACAGCAGAAGCGTTACAAGTGCGGCATCTGCGTCAAGACTTACATGTACCTGCACAGCCTGAAGAAACACATGATGACTCACGTTCAGCAGCAACAACAACAGCAGCAGCAAGTGCAACAACAACAGCAGCAAGTGCAacagcaacaacaacaacaagtgcAACAACAACATCAACAGCAGCAACAACAACAGCACCAGCAGCATCAACAGCAGGTGCAAGTGCAGCAACAGCTGCAACAGCAGGCCGTGCTGCAGGTGGGCGGCGTGCAGCAGCTCCACGTGCCGATACACGCGCAGCACGTGCAACAGGGCATCGTGCAGaacgcTCAGCACACATACCCTGTGATATCATCGGTGCAGTCTTTACAGTTGCAGCAAACCCAGCAGCAGGTTAATACGcAACAACCTCAGCAGCTGCAAGTCCAAACGATTCAAATACACCCGCAGCATCAACCGATCCAGATACACGCTGTCGGAGTGCAGCAAGTGCAACAACAGCAGCTACACGTAGCAACGTCGTCTTGCCAAACAATGCTGCCTAACATATTACAGCTGCAGCCAGCCGTAGCCGTGTCTGGCCTGGGCGGGCAGGACCTCGGCGGCGTCGCGCACCGCATCATCCTGCAGCCGCCAGGGACTCATGTGCAGCCACACCCTCACTCCGCCGTCTACACCATCCACCATTAA
- Protein Sequence
- MAAPRTQVLKFDKICRACLQIKKDMRPLFEQLTATMLMGISKVQVSMGDGLPNQLCLQCVHQISRCHAFKELVERNDVTLREQAKAMAEEALKLERQEKEKMLNLTCTEPFMQYMEVPIINSDSQILENFFSTEETVVQEEKDAFSDKVFMPEQPAPVQKEDELLNSDEESYMQMVVFQATSSVAPGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICDRTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFATKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSMCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCSVCNKAFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHMVTHTGHKKFVCPVCYKGCTSRSELRVHSTKHTGEKLFACELCSQRFSSASYLAVHRRHHTGERKYHCNVCGKGYIESNSYKKHMKTHEVKPDSEASTNSENSSETQVAAAAKNDNEAVQDVQANVTIGEDQEESQTQEPQTQESPIQQKRYKCGICVKTYMYLHSLKKHMMTHVQQQQQQQQQVQQQQQQVQQQQQQQVQQQHQQQQQQQHQQHQQQVQVQQQLQQQAVLQVGGVQQLHVPIHAQHVQQGIVQNAQHTYPVISSVQSLQLQQTQQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPAVAVSGLGGQDLGGVAHRIILQPPGTHVQPHPHSAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076809;
- 90% Identity
- iTF_00075775;
- 80% Identity
- -