Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979762.1:6265617-6267452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4e-06 0.00036 21.7 0.4 2 23 88 110 87 110 0.94

2 16 0.0068 0.61 11.6 3.1 3 23 119 140 118 140 0.95

3 16 0.0073 0.66 11.5 3.5 3 23 148 169 147 169 0.93

4 16 4.1e-05 0.0037 18.6 0.9 2 23 177 199 176 199 0.95

5 16 1.5e-05 0.0013 20.0 0.3 2 23 206 228 205 228 0.95

6 16 0.0027 0.24 12.9 0.0 1 23 235 258 235 258 0.94

7 16 2.4e-07 2.2e-05 25.6 0.4 2 23 264 286 263 286 0.96

8 16 0.013 1.2 10.7 1.2 2 23 302 324 301 324 0.94

9 16 3.8e-05 0.0034 18.7 2.2 2 23 332 354 331 354 0.96

10 16 2.1e-06 0.00018 22.7 1.1 2 23 360 382 360 382 0.97

11 16 0.056 5 8.7 4.9 2 23 390 412 389 412 0.94

12 16 2.7e-05 0.0024 19.2 3.0 1 23 418 440 418 440 0.97

13 16 1.5e-05 0.0014 19.9 1.3 1 23 445 468 445 468 0.98

14 16 0.015 1.3 10.6 0.1 2 20 488 506 487 508 0.93

15 16 0.00093 0.083 14.3 0.1 3 20 527 544 526 546 0.93

16 16 0.014 1.2 10.6 0.4 3 20 572 589 571 591 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4e-06	0.00036	21.7	0.4	2	23	88	110	87	110	0.94
2	16	0.0068	0.61	11.6	3.1	3	23	119	140	118	140	0.95
3	16	0.0073	0.66	11.5	3.5	3	23	148	169	147	169	0.93
4	16	4.1e-05	0.0037	18.6	0.9	2	23	177	199	176	199	0.95
5	16	1.5e-05	0.0013	20.0	0.3	2	23	206	228	205	228	0.95
6	16	0.0027	0.24	12.9	0.0	1	23	235	258	235	258	0.94
7	16	2.4e-07	2.2e-05	25.6	0.4	2	23	264	286	263	286	0.96
8	16	0.013	1.2	10.7	1.2	2	23	302	324	301	324	0.94
9	16	3.8e-05	0.0034	18.7	2.2	2	23	332	354	331	354	0.96
10	16	2.1e-06	0.00018	22.7	1.1	2	23	360	382	360	382	0.97
11	16	0.056	5	8.7	4.9	2	23	390	412	389	412	0.94
12	16	2.7e-05	0.0024	19.2	3.0	1	23	418	440	418	440	0.97
13	16	1.5e-05	0.0014	19.9	1.3	1	23	445	468	445	468	0.98
14	16	0.015	1.3	10.6	0.1	2	20	488	506	487	508	0.93
15	16	0.00093	0.083	14.3	0.1	3	20	527	544	526	546	0.93
16	16	0.014	1.2	10.6	0.4	3	20	572	589	571	591	0.92

Sequence Information

Coding Sequence: ATGGACACAAAGCCAGAGGAAATTTACATTAAACCAGAAATCAATATCGAAGTTGAAATCGAACCATACAGTGATGTTCCAGTGGAGGAGACGAACAGCAAATACGTTAAAGTAGAATCTCAAGACAGCAGCAGTACAAAAAGTCTTCAAAATACAGAGTCATACTATGGAACACCTGAAACGTCTACAGCAGTCATCGAATCAAAGAGAACGATAGAATTTGAAGGGAAAGTATACGAGAATGGTAAAATTAATAGATTACAATGTCCACAGTGCGATAATACGTTTAAGAATAGAGCCAATCTCAGAGCGCATATTAAATTCATACATTCCACCGACCAAGATGTTGTTGACTGCAACATTTGTTTTAGAACGTTCAAATCATTACTACATCTTCGATCTCACAAGAGTTCTGTCCACGCAGATGAAAAAGAAGTTGCTTGTGATTACTGTGACAAAACATTTTTGAATAAGAAAAAACTGAACAACCACATATTCTACTGCCACCCGGATGATGAAGAAAACGTCAGTTGTGAGGTATGTAAGAAGATTTTCAAAACCAAATACCGTCTGAAAGTCCACATCAAACAAGTTCATCCGGAAGGCCAAACGGTGACCTGTCCAGAATGTTCGAAGGAGTTTAAGAATAATATGCTTTTACAAAGACATGTTAAATGGGCTCATCCCTCAGATGGCTTGATTTACCGCTGCCCCCAATGCAGCAGGGTGTTACCATCGATAGATGGCTACAAACGCCACATGGCAGCCGTGCATGGCACCAAAAATGTCTCTTGTGACGTATGCAATAAGGTTTTCAAGACCAACGGTAGCTTGAATCGCCACATGTCAACAGTACACAGCAACGTAAAAGtcgaaagaaagaaatacaagACCGGGGATTTACAATGCACCGCGTGCGACAAGAAATTCGCTACAAACACAGCTGTACTGTGGCACTATGAGAAGTGTCACTCGGAAAATAAGGTGGATACATCTTGTCAGGTATGCTCGAGAGAGTTCTGCGATCTAAACAATTTAAAACGGCACATGGAAACCGTGCATTCTGAGCAAAGTGCGACGTGCAATATCTGCTTCAAAACGTACAAATCTCCTATGAACTTACAAAGGCACATAAGAATAACGCATGCGCCTCCCGAAGCGGCTAAAAGGTGCGAGATATGCCAGAAAACTTTCAAGTGCTCGATGCATCTAAAAATACATAACAACGTCGTTCATTCCAAAGAAGGAGAATTTGCTTGTTCAATTTGCAACAAGGTTTACTCCTCGAAAAAGTACATGAACAAGCATAAGAAAACTCATAATAGCAAAGAATATCCATGCACTATTTGTACAAAGTTCTTCAAATCTACTAACGATGTGACCAGGCATATAAGGAGGGTGCATATGAAAAACGGTGATCCAGATGAGTCAATGCAGGAAAACTGCAGCAACAAAGAGATGAGCTGTGTCAAATGTGGTCAGATGTTTCCAAATGACACAGAACTTCATGCTCATATTATAAATTGTGGACTTGTAAAAATAGAGCAGAATAGTAACGTAATAAGCGATGAAAACTGTTGTGGTAAATGTGGTGAAGTTTTCAACGATGCTACATTATTAGAGGCCCATATAATCCAGTGTGGGAACATTAAAATTGAAAGAATAGATGACGATGAttcaatagaaatcaatttagATAGCAAAATAGCTAATTGTGTCAAATGCAGAAGGGTTTTCAGCAATGTTACACAGCTACAGACACATAAAATCAGTTGTGACGGTGAAATAGAACGAAGAGAAATAAAAATGGAGATTGAAGAATGTGAtgatgaatag
Protein Sequence: MDTKPEEIYIKPEINIEVEIEPYSDVPVEETNSKYVKVESQDSSSTKSLQNTESYYGTPETSTAVIESKRTIEFEGKVYENGKINRLQCPQCDNTFKNRANLRAHIKFIHSTDQDVVDCNICFRTFKSLLHLRSHKSSVHADEKEVACDYCDKTFLNKKKLNNHIFYCHPDDEENVSCEVCKKIFKTKYRLKVHIKQVHPEGQTVTCPECSKEFKNNMLLQRHVKWAHPSDGLIYRCPQCSRVLPSIDGYKRHMAAVHGTKNVSCDVCNKVFKTNGSLNRHMSTVHSNVKVERKKYKTGDLQCTACDKKFATNTAVLWHYEKCHSENKVDTSCQVCSREFCDLNNLKRHMETVHSEQSATCNICFKTYKSPMNLQRHIRITHAPPEAAKRCEICQKTFKCSMHLKIHNNVVHSKEGEFACSICNKVYSSKKYMNKHKKTHNSKEYPCTICTKFFKSTNDVTRHIRRVHMKNGDPDESMQENCSNKEMSCVKCGQMFPNDTELHAHIINCGLVKIEQNSNVISDENCCGKCGEVFNDATLLEAHIIQCGNIKIERIDDDDSIEINLDSKIANCVKCRRVFSNVTQLQTHKISCDGEIERREIKMEIEECDDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01124792;
90% Identity: iTF_01124792;
80% Identity: -