Onub030941.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979764.1:2613750-2619935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 1.4e+02 4.2 0.1 1 23 42 65 42 65 0.91 2 19 2.2 2e+02 3.7 1.8 1 23 93 116 93 116 0.92 3 19 0.0023 0.2 13.1 0.3 1 23 137 159 137 159 0.97 4 19 0.00079 0.071 14.5 0.1 1 23 163 185 163 185 0.95 5 19 0.0001 0.0091 17.3 0.2 1 23 190 213 190 213 0.97 6 19 0.22 20 6.8 0.6 2 23 220 242 219 242 0.89 7 19 3.7e-06 0.00033 21.9 1.2 1 23 249 272 249 272 0.98 8 19 0.0076 0.68 11.4 2.5 1 20 278 297 278 300 0.95 9 19 2.2e-07 2e-05 25.7 2.5 1 23 306 328 306 328 0.99 10 19 0.02 1.8 10.1 0.6 1 23 480 503 480 503 0.96 11 19 0.4 36 6.0 0.4 2 23 529 550 528 550 0.96 12 19 0.0066 0.6 11.6 0.2 1 23 572 594 572 594 0.98 13 19 2e-05 0.0018 19.6 0.3 1 23 598 620 598 620 0.98 14 19 1.4e-05 0.0013 20.0 0.3 1 23 625 648 625 648 0.96 15 19 5.6e-05 0.005 18.1 0.5 2 23 655 677 655 677 0.97 16 19 6.9e-05 0.0062 17.9 1.1 1 23 684 707 684 707 0.98 17 19 0.0038 0.34 12.4 3.9 2 23 714 735 713 735 0.96 18 19 8.3e-07 7.4e-05 23.9 1.1 1 23 741 763 741 763 0.98 19 19 0.00086 0.078 14.4 0.1 2 23 768 790 767 790 0.95
Sequence Information
- Coding Sequence
- ATGGGTTCCGGATACGACGACCAGACGTTAACTCGAGATGTAGAACAGAAGAGAATCAGTAGGGAGAGTGCCATCACGCTCATCCACAGCACCAACGTGTGCCCCTTTAAATTCCACAGGGGCTTCATGTGCTTTTACTGCCCCAGCCTGTTTGTTAACATGCCAGAATTGGGACGACACGTTGAACTAGAACACAAACAGATGACAGAAGATGACATAAGAAAGGCAACAGGAAGGTCAAGCAAATGCCTATCGATCAAAATCAATGTATTAGATTACAACTGCAAGCTTTGCAGCAACGAGCTGTTCAATTTTGAAGATCTGAAACACCATCTGATTGGGAAACATAAGAAACCCATTGATTTGAACAACGATGGGGTATTGCCTTATAGAATAACGCAAGATGAGTTTATCTGTGTGATTTGCGAGAAGAAATTGGAGAATTACAGGCTTCTGAATAGGCATATAAACGAGCATTTCATGAAGTTCATTTGCGATCAGTGCGGAGCTGGATTTTCCTCGGAGTCACGTTTGAGGGCGCATGTTGTTTCACACCAAATAGGATCATACCCGTGTGAAGAGTGCGGGAAAGTATTTAGCAAGATCACGTCAAAACAGCTGCATATTCAAACGGTACACTTGAAGACAAAAAGGAACAAGTGCATGTACTGCGAAGAGACATTCATGGACTACTATCAGAAACAGAAGCATTCTCTGGCTGTGCATGGGATGAAGATGAGGGACTACAAATGTGGGTACTGCCCGAGAGTGTTTTTCAGCAGTTCCTACTTGCGAGCGCACGAGCGCCGGAATCATATTAAAACGCAAATATTTACTTGCGATGTTTGTGAGTACTCGTCTTTCAGTAAGGAATCACTGACTCGGCATATGATTTGTCATACAGGCGAAAAGAACTTCAAATGCCAAGTTTGTAAAAAGGCGTTTTCCAGAAAGAAGACTCTTACTGAGCATATGAGGATACACAATAATGATCGTCGGTTTGCTTGGATCATCCAAGCAAGTCCTTCCACGGTTACCATCAAAGACGATGAAGGCAACAACATCACACTCAATATCCTCAGAACCCCGATATGCCTTGACAACCTGAAGTGGGAATACGAAGATGCAccacaaaaaaacaataagataCCCCATCAATATACTGAAGATACTAAAGTTCGTAAACCCTTGAAATTGTCGAACCCTAACAATAATGTTACCAGCGTACTATTTTTGAAAGACCCGATATGTCTTGATGAATGGAACAGAGTGGCAGAACCGCTTAGCCAAGTGACGTATAACGTGAAAACTATCCAAGGCTCCTACGTTCGACCTTCAAGAAAGGCAAACGCAGTAGAATTCCAAGCGTGGAAGCAAAATGCTTTGGTTATCTTCGAAAACTCCTACGTCTATCCTTTTGTGCATTCCGGTAACAAATATAAATGCTTTGTATGTGCTAAACAATTTCTGGATCCAAGTTTACTGAAAGAACACACGACTAGAGAGCATAACATCAAAGATTTACAAAAAGAACTAAATAACCGGTTGAGAGATAAAAATCTAAAGATTGATATATCAGATTTACAATGCAGGATATGCCTTGAGCATCTTCCTAATTTCGAAGCTCTGAAAGTCCATTTAAAAGATCACGGCaaaaatattgacttagaaCTGACAGACAATTTGATCCCTTTTCGATTAGGCGGAAGTACATTTGAGTGTCAAGTCTGTGGAGAAAACTTCTTGAAGCTGAGGCTCCTTATCATCCACATGAGCAAACATttcaataattataattgtGAAGTTTGTGGGTCTGTGTTTATATCTTTGAATCTTTTAAAACGTCATCAACAGACGCATGTCTCCGGGAACTACCCATGCGAGAAATGTGACAAGGTGTTCAGCAACTCAGCTAAGAGGACACTGCATATGAGAGGAGTTCATCTCAAGCAGCTACCCAGACGGTGCCCTATATGCCCTGAAAGATTCAACTCCAACTACCAAAGGACTAAGCATTTAAGAATAGTCCACAACCAAACCAACGGACTGTATAGATGTGAAACGTGTGGGCGAGAATACGACCTGAAATACCATCTTCTGATCCACATAAGATCTGTTCACCTCCAAGAGCGGAATCAGGAATGTCCTATATGTCATTCTAGGTTCTTTTCAAAGTACTGCCTCTCAAGACACATGGTTATTCATACAGGAGAAAAGAACTTCAAATGTAATGTATGTGGGAAAGCCTATGCGAGAAGAAAGAATTTACGAGAACACTTTAGAGTGCATGAACTGAGTCAAACATGCTCGGTTTGTGGTCAAGTTTGTGCTGATCAAGCGTCCCTTGGCGCGCATATGAATGGAGTCCACGGAGTGTTATAG
- Protein Sequence
- MGSGYDDQTLTRDVEQKRISRESAITLIHSTNVCPFKFHRGFMCFYCPSLFVNMPELGRHVELEHKQMTEDDIRKATGRSSKCLSIKINVLDYNCKLCSNELFNFEDLKHHLIGKHKKPIDLNNDGVLPYRITQDEFICVICEKKLENYRLLNRHINEHFMKFICDQCGAGFSSESRLRAHVVSHQIGSYPCEECGKVFSKITSKQLHIQTVHLKTKRNKCMYCEETFMDYYQKQKHSLAVHGMKMRDYKCGYCPRVFFSSSYLRAHERRNHIKTQIFTCDVCEYSSFSKESLTRHMICHTGEKNFKCQVCKKAFSRKKTLTEHMRIHNNDRRFAWIIQASPSTVTIKDDEGNNITLNILRTPICLDNLKWEYEDAPQKNNKIPHQYTEDTKVRKPLKLSNPNNNVTSVLFLKDPICLDEWNRVAEPLSQVTYNVKTIQGSYVRPSRKANAVEFQAWKQNALVIFENSYVYPFVHSGNKYKCFVCAKQFLDPSLLKEHTTREHNIKDLQKELNNRLRDKNLKIDISDLQCRICLEHLPNFEALKVHLKDHGKNIDLELTDNLIPFRLGGSTFECQVCGENFLKLRLLIIHMSKHFNNYNCEVCGSVFISLNLLKRHQQTHVSGNYPCEKCDKVFSNSAKRTLHMRGVHLKQLPRRCPICPERFNSNYQRTKHLRIVHNQTNGLYRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCNVCGKAYARRKNLREHFRVHELSQTCSVCGQVCADQASLGAHMNGVHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -