Onub002983.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979734.1:3102145-3109361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-05 0.0017 19.6 1.2 2 23 144 165 143 165 0.97 2 17 1.8e-06 0.00016 22.8 5.9 2 23 173 194 172 194 0.98 3 17 0.0019 0.17 13.3 1.0 1 23 200 222 200 222 0.97 4 17 5e-05 0.0045 18.3 2.5 1 23 228 250 228 250 0.96 5 17 1.1e-05 0.001 20.4 0.1 3 23 258 278 256 278 0.97 6 17 1.8e-05 0.0016 19.7 0.6 3 23 286 306 284 306 0.97 7 17 0.06 5.4 8.6 5.5 1 23 312 334 312 334 0.97 8 17 7.3e-05 0.0066 17.8 0.5 1 23 340 362 340 362 0.97 9 17 0.0006 0.054 14.9 4.3 1 21 368 388 368 397 0.96 10 17 0.0006 0.054 14.9 4.3 1 21 403 423 403 432 0.96 11 17 0.0006 0.054 14.9 4.3 1 21 438 458 438 467 0.96 12 17 0.0006 0.054 14.9 4.3 1 21 473 493 473 502 0.96 13 17 0.0006 0.054 14.9 4.3 1 21 508 528 508 537 0.96 14 17 0.0006 0.054 14.9 4.3 1 21 543 563 543 572 0.96 15 17 0.0006 0.054 14.9 4.3 1 21 578 598 578 607 0.96 16 17 0.0006 0.054 14.9 4.3 1 21 613 633 613 642 0.96 17 17 1.5e-05 0.0013 20.0 2.1 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- ATGAACACTTTAAATACGGATGACGTTGtagatttcaataaaatatgtcGAGCGTGTTTATCAGACTCTGGCCCATTCAAGGATTTGTTTTTAGTTTGTACTCCAGAAATGTACAAGTACTGTACATCGGTTGAGGTTTCTAAAACAGATGAGTTACCAAAACAAATCTGTCAAAAATGTCTGGAGGCGCTCAACAAACTGTTTTTCTTCAAGGAAGTTGCCATTCGTTCTAATGCTATTTTAAAGAAACAAGCTGCGAAGactaaaataaaacaagaAGGCCAGGGGAGTGCAAGTGCAGAAAATAATTCAAACGATGACGATGATAGCTCCAGTGACGACAGCAGTTCCAGTGAGCCAGCAGCCGAAGCTCCCAGAATCACAGGAAAATATAAATCAACACGGATCGTCAGAAGGAATACGCGTTTGAAGTGCGCTAAGTGTGACCGATCATTCCAGAAGTACGAAAACTTCGAAGCTCACATGAGAAGTCATTTTGGTAAAAAGCCAGACATAAAATGCGACCACTGTGACAAGACATTCAATTCGCTGAAGAACCTCCACAGTCACATGCGAACACACACAGGCGTCCGAAAGTACCAGTGTAGGACGTGTGGCAAGAGGTTCATGTATCTCAACGTGTTGAAGAACCACGAACTGATCCACTCCGGTGACAAGAAGCACGCGTGCCATCTGTGCGATGCGAACTTCGTGCAACTTTACAACTTAAAGAGACACTTAGAAACCCACACCAATGAAAAGAACTACGGATGCGCGCAGTGCGGGAAGAAATTCGCCCAGCCCGGCAACCTGAAGATCCACCTGATAAGGCATACCGGGATCAAGAACATAGCGTGCACTTTGTGCGACATGCGCTTTTATGTGAAGAGTGACCTGTACAAGCACATGCGCTCGCACTCGTCGGACCGGCCGTACTCGTGCGAGTACTGCGACAAGCGCTTCAAATGCAAGAGCTTCCAGATCGTGCACTCCCGGACGCACACAGGCGAGCGCCCCTACGCGTGCGATATCTGCCCGAAGCGTTTCCGCGCGTTCAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGAAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGAAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGACCTGCGCAACCACCGCATGATCCACACGGGCGAGAAGCCGCACAAGTGCGCCGTGTGCGGGCAGGCCTTCATACAGAAGTGCGCGCTCAACCGCCACATGAAGGGCCACCGCGCTGAGCCACGCCTGCCGTTGCCGCACGCCTACCCCGACCGTCTGCCGTGGCCACTGGACGACCGTCTGGCCAACTAG
- Protein Sequence
- MNTLNTDDVVDFNKICRACLSDSGPFKDLFLVCTPEMYKYCTSVEVSKTDELPKQICQKCLEALNKLFFFKEVAIRSNAILKKQAAKTKIKQEGQGSASAENNSNDDDDSSSDDSSSSEPAAEAPRITGKYKSTRIVRRNTRLKCAKCDRSFQKYENFEAHMRSHFGKKPDIKCDHCDKTFNSLKNLHSHMRTHTGVRKYQCRTCGKRFMYLNVLKNHELIHSGDKKHACHLCDANFVQLYNLKRHLETHTNEKNYGCAQCGKKFAQPGNLKIHLIRHTGIKNIACTLCDMRFYVKSDLYKHMRSHSSDRPYSCEYCDKRFKCKSFQIVHSRTHTGERPYACDICPKRFRAFKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKDLRNHRMIHTGEKPHKCAVCGQAFIQKCALNRHMKGHRAEPRLPLPHAYPDRLPWPLDDRLAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -