Onub030714.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979763.1:7043247-7047922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.8e-07 6.1e-05 24.2 0.4 1 23 20 42 20 42 0.97 2 14 0.00021 0.019 16.3 2.4 3 23 50 71 48 71 0.94 3 14 4.6e-06 0.00041 21.6 2.5 1 23 77 99 77 99 0.98 4 14 9.7e-06 0.00087 20.6 3.6 1 23 104 126 104 126 0.99 5 14 1.9e-06 0.00017 22.8 2.7 1 23 132 154 132 154 0.99 6 14 2.1e-07 1.9e-05 25.8 0.6 1 23 160 183 160 183 0.96 7 14 3e-07 2.7e-05 25.3 1.6 1 23 189 211 189 211 0.99 8 14 1.6e-05 0.0015 19.8 0.9 1 23 217 239 217 239 0.98 9 14 0.00075 0.068 14.6 2.0 1 23 245 267 245 267 0.99 10 14 1e-07 9.3e-06 26.7 0.7 1 23 273 295 273 295 0.98 11 14 5.5e-07 5e-05 24.5 2.4 1 23 301 323 301 323 0.98 12 14 0.098 8.8 7.9 3.8 1 23 329 348 329 348 0.95 13 14 1.2e-06 0.0001 23.5 0.7 1 23 354 376 354 376 0.98 14 14 0.54 48 5.6 4.0 1 21 382 402 382 403 0.93
Sequence Information
- Coding Sequence
- ATGGATGAAAATCAAGAAAAAGAACAGAGCAAACAACGAAAGGCGAAGTCGAAAAAGTTCGCTTGCGACATCTGCCAAAAGAAATTCACTTACAACGGTTCTTTAGAAGTACACATGAAGATTCACACAGGAGAAAAAACCCATTTGTGCCAATTGTGCAACACAAAGTTTGTCAACAGCAAAGATTTGACTAAACACATAGAAAGCACACACTCGGACAACGGCAAATATGTCTGTACTATTTGCAATAAAACGTTTGACAAAACAAGGCTGTTGAAAAAACATCTAAAATCTCACTTCGATGACAaattcaaatgcagttattgcTCGAAAGAGTTCCAAAGAAAGAAAGGATTAAAAGAACACTTAAAAACGCACACCGGCGAGAGAAAATACAGCTGTGAAGTTTGTAACAAGTCGTTCGGGCATAACCAAACGTTGAAATCCCATATGCTCACCCACACCGGTGAACGGCCTTATGTTTGTGATGTGTGTGGAAGACGGTTCCCCCAAAGGACACACTTGAAAagacacataataataatacacacTGGAATGAAACCGTATTCCTGTAAAATCTGTAACAAGCAGTTCTCGAGCAAAAGTTATTTGGCAATCCATGAACGGACCCATACGGGTGAACGACCGTTCTCATGTGAGGTTTGCAAGAAGGATTTCACAGCGTACACAACGTTGAAAGTGCATATGAGAGTGCATACTGGTATTAAACCGTATACTTGCAGTTTTTGCAGCAGGCAGTTCGCTCAAATGGCCAGTTTTAAATTGCATGAAAGGACTCATACCGGTGAAAAACCGTTTTCATGTAAAGTTTGTAAGAAACCGTTCTCTGATAACGGTTACTTGAAGATTCATATGCGAGTGCATACGGGAGAGAAGCCCTATCCTTGCGAGATTTGTAAAAGATGTTTCCGCGAAACCGGCCAGCTAAAACGCCACATGCGAGTCCACACGGGCATCAAACCTTACACCTGCAAGATATGCAACAAGCAAATAGGAAATCTATCCAAACACATGCGTGTGCACTCTGACGAACGGCCTTATAATTGTACTGTGTGTAATAAACAGTTTTCTATAAGTGGGAATTTGAAATTGCATATGAGGATACATACGGGGGAGAAACCGTTTTCGTGTGAGATGTGCTGTAGCCAGTTTGCGCAGAGCAGTGCGTTGAAAAGGCATAGGTGCAATAGGCCTAGTGATGGCTGA
- Protein Sequence
- MDENQEKEQSKQRKAKSKKFACDICQKKFTYNGSLEVHMKIHTGEKTHLCQLCNTKFVNSKDLTKHIESTHSDNGKYVCTICNKTFDKTRLLKKHLKSHFDDKFKCSYCSKEFQRKKGLKEHLKTHTGERKYSCEVCNKSFGHNQTLKSHMLTHTGERPYVCDVCGRRFPQRTHLKRHIIIIHTGMKPYSCKICNKQFSSKSYLAIHERTHTGERPFSCEVCKKDFTAYTTLKVHMRVHTGIKPYTCSFCSRQFAQMASFKLHERTHTGEKPFSCKVCKKPFSDNGYLKIHMRVHTGEKPYPCEICKRCFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPYNCTVCNKQFSISGNLKLHMRIHTGEKPFSCEMCCSQFAQSSALKRHRCNRPSDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076804; iTF_00075765;
- 90% Identity
- iTF_00076804; iTF_00075765;
- 80% Identity
- -