Onub029884.2
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979762.1:2173678-2226752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0029 0.26 12.8 3.2 1 23 608 630 608 630 0.99 2 29 0.093 8.4 8.0 1.1 1 23 648 671 648 671 0.91 3 29 0.081 7.3 8.2 0.3 2 19 678 695 677 699 0.89 4 29 0.0016 0.14 13.6 0.1 2 20 707 725 707 726 0.95 5 29 0.00082 0.073 14.5 4.6 1 23 740 762 740 762 0.95 6 29 0.00082 0.073 14.5 4.6 1 23 795 817 795 817 0.95 7 29 0.00082 0.073 14.5 4.6 1 23 850 872 850 872 0.95 8 29 0.00082 0.073 14.5 4.6 1 23 905 927 905 927 0.95 9 29 0.00082 0.073 14.5 4.6 1 23 960 982 960 982 0.95 10 29 0.00082 0.073 14.5 4.6 1 23 1015 1037 1015 1037 0.95 11 29 0.00082 0.073 14.5 4.6 1 23 1070 1092 1070 1092 0.95 12 29 0.00082 0.073 14.5 4.6 1 23 1125 1147 1125 1147 0.95 13 29 0.00082 0.073 14.5 4.6 1 23 1180 1202 1180 1202 0.95 14 29 0.00082 0.073 14.5 4.6 1 23 1235 1257 1235 1257 0.95 15 29 0.00082 0.073 14.5 4.6 1 23 1290 1312 1290 1312 0.95 16 29 0.00082 0.073 14.5 4.6 1 23 1345 1367 1345 1367 0.95 17 29 0.00082 0.073 14.5 4.6 1 23 1400 1422 1400 1422 0.95 18 29 0.00082 0.073 14.5 4.6 1 23 1455 1477 1455 1477 0.95 19 29 0.00082 0.073 14.5 4.6 1 23 1510 1532 1510 1532 0.95 20 29 0.00082 0.073 14.5 4.6 1 23 1565 1587 1565 1587 0.95 21 29 0.00082 0.073 14.5 4.6 1 23 1620 1642 1620 1642 0.95 22 29 0.00082 0.073 14.5 4.6 1 23 1675 1697 1675 1697 0.95 23 29 0.00082 0.073 14.5 4.6 1 23 1730 1752 1730 1752 0.95 24 29 0.00082 0.073 14.5 4.6 1 23 1785 1807 1785 1807 0.95 25 29 0.00082 0.073 14.5 4.6 1 23 1840 1862 1840 1862 0.95 26 29 0.00082 0.073 14.5 4.6 1 23 1895 1917 1895 1917 0.95 27 29 0.00082 0.073 14.5 4.6 1 23 1950 1972 1950 1972 0.95 28 29 0.00082 0.073 14.5 4.6 1 23 2005 2027 2005 2027 0.95 29 29 0.00011 0.0099 17.2 0.1 1 23 2032 2054 2032 2054 0.98
Sequence Information
- Coding Sequence
- ATGGCCCTCTGTGAAAGCCAGCTCGATTCAGCACTACCTCAGTTGAAGCGGGAGGAGAACTCCCACGGCAGCAGCGACGAGTGCAAGAGCCCCGACAAGAAGCCCACGATGGAGCCCAATGGGGACATCTATGGGCTGGACCAAGTGCCTGGAGGTCTACCCCTGAGTGTGGACTACCGATCCCCGGTCTCCCACTTTGTGCCGCCAGCTGTCGAGTTGTACGCGGCAAGACACAAGCCCGAGCAGATCAGTCCGCCAGAGCCTTCAGTGGTAACTCCAATCAAGCGTAAACGGGGCAGACCGAGGGTAGACAAGACCAGTCCAGAATATTTGGCCAATCTGGCCGCGAGAAAGCAGGCCAAAGAGATGGCGGCCGTGATGAATAGTCGCTCGCCAGCAATCGAATCCGGGGAGAAACGTAAGCGAGGCCGCCCTAGAGTCGACAAGACCAGTCCTGAATATCTGGCCAGGAAGCGGGCTAGGGAGTTGGGCCGCCCTAGAGTCGACAAGACCAGTCCTGAGTATCTGGCCAGGAAGCGGGCTAGAGAGTTGGAAGCATTGGAGCGGAAGGCGAAACGAGAGTATAAGCGGCGCGGGACTGCAGCGAAACCGGTATCGGTAGTGCCCCTCAAAGTGGGGGGTAACCGGGTCAAAAAGTTGCCAACGGCAAAAAAACCGATCGCGACCCCCATAAGGAAAGCGCCCCCTAAATTAGGGGCGAGGAAGGTGGTGGACAAACAAGCTATGAGCATTATCAGGCGAAATGCTAAATTTATAAAAAGGAAAGATTCGGCTGCGTCGTCCTCGGCTGGCGAGACGACGCCGCGTGTTAAGCGCAAATACACAAAACGCGCGCCAAGCGCCAAGAAAAATGACGCGGGAGGAAGCACAGAGCGAGTGAAGGGAAAACGAGGGCGGCCTCGTAAGACGGACCAAATGACACACAAGCAGGGACAGCAACCTAAGATTCGTGTCAGAAGTAACCTGATGCCAGTCAACACGGAACCGATCACACTCGACAGCGACGACGAGCCCGACTTAgGGTCACCGAGTCAAGCGTCTGACTCGCTAAGTCTGGACGAGAATCTGCGCGCGTTGCGACATATACACGAAAAGTACGCGAATATTGACAAGGATGACTTATTCGAAGCGCACCTGCTACCCGCAAACTTTAAGAAACCGCTGTCGGAGCAAACGCAGCGGATTCGCGACGATGACGAGGTTCTCTCCGTGAGGAGTTCCGAAGGTAACGCATCAGTGAAAGAGCTTGACACAAGAGTTGAGAAGCTGGAAGACAGCTCCAATTCGGATTCCGATAGCAGCAGTTCTGGATCTGGCAGTTCCAGCTCTGGCTCTAGTTCAGGCTCCAGTTCCGGCAGTTCCAGCTCTTCGGACAGTTCCGATTCGTCCGACGACGAGGCGCCCAAGACTGAACCGCCGCCGCAGAACAACACATCTATTGAAGACGACCACTCTGACGAGTGTAACCCGGACAGCTACTACCCGCAAAGTTACAATGCGGACAGGTACAATTCAGATAGGTACTATTCGGACATTGAAAATCACACAACGGGTTTCAACGGTTTTAGTTCGGACAGTTCCAATTCGTCCGACGACGAGGCGCCCAAGACTGAACCGCCGCCGCAGAACAACACATCTCTTAAGGACGACCAATCGTTCGGCGCGTGGTCATACAGCGGTGGCAACCAGTCGGACGCGTCGGATTCCGACCCGGAGCGCGCGGGCGACCCGGGTTCGATGCCCCGCGCGAGCGAGCACGACGAGATCAGCGAGAGCGACAACGAGTCGGCCGACAAGAGCTTCCAGTGTCACATATGTCGGAAGTGGTACTCTACTAGGGTTACCCTTAAAATCCACAGACGCATCCATCAGAACCGCGGTGGCGCGAACTCACGAGCCCGGACGCGCTCGTCCGAGCGCTACGAGTGTGACTGTTGCAGCGAGACCTTCAGCCGCCGCGAGAAGCTCTGGGAGCACAAAGCGGAGGCCCACCGCGGATCCATGACGGTTCGCTGCGAAGTGTGCCGCAAGTGTTTCGAAGATGATGCAGAATTAGCGGCGCATGATCGAGCGCACACGCCCGATGAGCGAGCCGGCCGCTGCGCCGACTGCGGCGCAATGTTCGCGCGCTACGACCAGCTGCGCCGGCACCGCGCGTGCGCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTACAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTACAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTACAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTACAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGTCCAGACAGCCGGGGGTCCATAGCCACTCGCACGGCGCGTCGTCCGCCAACAGCAAGCTGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTCGGCCACGCGCACTCGCTCACGCGCCACCTGCAGAACCACGCGCGCCAGCTCTACCGCTGCGTCGTGTGCAAGGCGTCATTCGTCCGCGCGGACCAGCTGGCCCAACACCTGAACAGCCACCTCGCGACGTACAAGCGGCTCAAGCCGTAG
- Protein Sequence
- MALCESQLDSALPQLKREENSHGSSDECKSPDKKPTMEPNGDIYGLDQVPGGLPLSVDYRSPVSHFVPPAVELYAARHKPEQISPPEPSVVTPIKRKRGRPRVDKTSPEYLANLAARKQAKEMAAVMNSRSPAIESGEKRKRGRPRVDKTSPEYLARKRARELGRPRVDKTSPEYLARKRARELEALERKAKREYKRRGTAAKPVSVVPLKVGGNRVKKLPTAKKPIATPIRKAPPKLGARKVVDKQAMSIIRRNAKFIKRKDSAASSSAGETTPRVKRKYTKRAPSAKKNDAGGSTERVKGKRGRPRKTDQMTHKQGQQPKIRVRSNLMPVNTEPITLDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLFEAHLLPANFKKPLSEQTQRIRDDDEVLSVRSSEGNASVKELDTRVEKLEDSSNSDSDSSSSGSGSSSSGSSSGSSSGSSSSSDSSDSSDDEAPKTEPPPQNNTSIEDDHSDECNPDSYYPQSYNADRYNSDRYYSDIENHTTGFNGFSSDSSNSSDDEAPKTEPPPQNNTSLKDDQSFGAWSYSGGNQSDASDSDPERAGDPGSMPRASEHDEISESDNESADKSFQCHICRKWYSTRVTLKIHRRIHQNRGGANSRARTRSSERYECDCCSETFSRREKLWEHKAEAHRGSMTVRCEVCRKCFEDDAELAAHDRAHTPDERAGRCADCGAMFARYDQLRRHRACAHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKYRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKYRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKYRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKYRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKSRQPGVHSHSHGASSANSKLPHACAQCGKRFGHAHSLTRHLQNHARQLYRCVVCKASFVRADQLAQHLNSHLATYKRLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -