Onub030942.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Ostrinia nubilalis
Gene Symbol
-
Assembly
GCA_963855985.1
Location
OY979764.1:2623279-2637494[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 51 4.3 3.8e+02 2.8 1.5 1 23 56 79 56 79 0.96
2 51 0.037 3.3 9.3 0.2 2 23 102 124 101 124 0.97
3 51 0.027 2.5 9.7 4.7 1 23 146 168 146 168 0.97
4 51 0.00025 0.023 16.1 1.4 1 23 172 194 172 194 0.98
5 51 0.077 6.9 8.3 0.6 1 23 199 222 199 222 0.95
6 51 0.00042 0.038 15.4 1.7 1 23 228 251 228 251 0.98
7 51 0.21 19 6.9 1.1 1 23 258 281 258 281 0.95
8 51 0.0092 0.83 11.2 5.2 1 23 287 309 287 309 0.96
9 51 0.042 3.7 9.1 1.3 1 23 409 432 409 432 0.97
10 51 0.018 1.6 10.2 1.7 1 23 453 475 453 475 0.97
11 51 0.026 2.3 9.8 0.0 1 23 479 501 479 501 0.96
12 51 0.00026 0.023 16.1 0.1 1 23 506 529 506 529 0.96
13 51 2.1 1.9e+02 3.8 3.5 1 23 565 588 565 588 0.95
14 51 0.0035 0.31 12.5 0.5 1 19 594 612 594 613 0.97
15 51 1.3 1.2e+02 4.4 1.5 1 23 656 679 656 679 0.93
16 51 0.32 29 6.3 0.4 1 23 707 730 707 730 0.97
17 51 5.7e-05 0.0051 18.1 0.2 1 23 751 773 751 773 0.99
18 51 0.048 4.3 8.9 0.4 1 20 777 796 777 799 0.91
19 51 0.0052 0.46 12.0 0.1 1 23 804 827 804 827 0.97
20 51 0.098 8.8 8.0 4.7 2 23 834 856 833 856 0.91
21 51 1.3 1.1e+02 4.5 1.5 1 23 863 886 863 886 0.91
22 51 0.0023 0.21 13.1 0.8 1 20 895 914 895 915 0.95
23 51 1.4e-05 0.0013 20.0 4.7 1 23 923 945 923 945 0.98
24 51 0.018 1.6 10.3 0.7 1 21 1010 1030 1010 1033 0.87
25 51 0.98 88 4.8 0.4 1 23 1060 1083 1060 1083 0.94
26 51 0.0018 0.16 13.4 1.4 1 23 1104 1126 1104 1126 0.97
27 51 0.005 0.44 12.0 0.1 1 23 1130 1152 1130 1152 0.98
28 51 0.00074 0.066 14.6 0.3 1 23 1157 1180 1157 1180 0.96
29 51 0.12 11 7.6 2.9 1 23 1186 1209 1186 1209 0.95
30 51 0.17 15 7.2 1.1 1 23 1216 1239 1216 1240 0.95
31 51 0.003 0.27 12.7 1.9 1 20 1246 1265 1246 1267 0.97
32 51 0.00078 0.07 14.5 0.5 1 21 1274 1294 1274 1295 0.97
33 51 0.023 2.1 9.9 1.4 1 23 1356 1379 1353 1379 0.92
34 51 1.8 1.6e+02 3.9 0.3 1 23 1407 1430 1407 1430 0.92
35 51 0.0015 0.14 13.6 0.6 1 23 1451 1473 1451 1473 0.98
36 51 0.0044 0.39 12.2 0.0 1 23 1477 1499 1477 1499 0.97
37 51 0.002 0.18 13.2 0.1 1 23 1504 1527 1504 1527 0.97
38 51 0.66 59 5.3 0.8 2 23 1534 1556 1533 1556 0.93
39 51 0.005 0.45 12.0 3.2 1 23 1563 1586 1563 1586 0.95
40 51 0.79 71 5.1 2.7 1 20 1592 1611 1592 1614 0.94
41 51 5.5e-05 0.005 18.2 0.3 1 23 1620 1642 1620 1642 0.99
42 51 0.5 45 5.7 1.8 1 14 1648 1661 1648 1665 0.87
43 51 0.92 83 4.9 0.1 1 23 1724 1747 1724 1747 0.90
44 51 0.85 76 5.0 1.0 2 23 1820 1841 1819 1841 0.89
45 51 0.025 2.2 9.8 0.0 3 23 1847 1867 1845 1867 0.96
46 51 0.0036 0.32 12.5 0.6 1 23 1872 1895 1872 1895 0.95
47 51 0.0039 0.35 12.3 0.7 2 23 1902 1924 1901 1924 0.90
48 51 0.0001 0.0093 17.3 1.9 1 23 1931 1954 1931 1954 0.97
49 51 0.14 12 7.5 4.6 1 20 1960 1979 1960 1981 0.97
50 51 3.4e-06 0.00031 22.0 1.1 1 23 1988 2010 1988 2010 0.99
51 51 9.4e-05 0.0085 17.4 4.1 1 23 2016 2038 2016 2039 0.95

Sequence Information

Coding Sequence
ATGCAGGCCGACAGGCAGAGAAAATTTGTGCCTACAGAAACGATTGCTGCTACACTTGTATCCCCCCGGGATACTGCCGATCGGAGACGTATTCTGTTCAGAAAAAACATTTCTATTATAATAGAATCATCTACAGCGTACCCTTTCAAGTACAGAAAAGGAACCTACATGTGTTACTATTGCAGAAACACATTTCTGGAGCCTGAAAAACTACGAGAACACAACAAAACTCAGCATTCCGATGTAAAAATAACAGTTAAACCAAAGAAGTATGAGCCCTTGAAAATGGACTTCACGGTGACGACTTGTAAGCTGTGCGGCGTTGATATACCTGattatacaaatctgaagttgCATTTGAAAACGGAACATAATAAAACGATTGACTGCACTTATGGGGATAGTGTACTACCATACAAGCTGAGCAGAGACGAGTACTGCTGTCAGATATGCGGCAAACGGTACGAGATGTTCCTCAGTCTCCACCGGCACATGAACGAACACTTTGGGCAGTATATTTGTGAGAATTGCGGGAAGAATTTTGTGACTCAGCATAGGATGGCGAATCATGCTCGAACACACGAGCGTGGTGTGTTCCCTTGCAGGCTGTGTAAAGAAACCTTCGCGTCGTACGCCGCAATGTGCACTCACGTGGCCAAAGTCCACAGATCCAACCAACGATACAAATGCCCCATTTGTGACGAAAAATTCGCTTCTTACAAACATCGGGTGAAACATTTGAGCACGGTTCATGGGGAGAAAATTACCGTGTTTCCTTGTGCTCTATGCCCGAAAGTGTTCGATTTATGCAGCCGTAGGACAGCCCATATAAGGTTCCAGCACCTCCAAGAGCGCAATCATGTGTGCCACGAGTGCGGGATGAAGTTCTTCTCAAATCACGAGCTACAGGAGCATTCTATCAAACATAACGGTGAAAGGATATACCAGTGCGATGTCTGTGATGATGACAGCACAGGCTTCGAAAGCAACAATTCCTTAAAAGAACTTAGAGACGAAGCTCAGGCGCTTATAAGCAGCGCAAACGCTTTACCGTTCAAAGTCCACAAAAGCCATTTTCTGTGCTTTTTCTGCGACAATCTATACCCGGACTTTTACAAACTAGAACACCACAATTTGACCGAACACCAGGTTACTGAGAAGCAATTAGCCTATTCTATAGTAAGGCTCGCAAAAACACAGGACATCAAAATTAATTTCAGGAATTTTGAATGTAAACTCTGCACGCACGTCGCCGAAAATTATGAAGAGCTAAAAGACCATCTCAGGTCTTTCCACGATATAAAATTGAATGTGAGCAACGACGGGATATTCCCCTATCATATTAATTCTGAAGGATTCATATGTGTGTTCTGCGATGAGAATTTCCAACATTTCAAGTTATTAAATCAGCACATTAACATCCATTTCCGGAACTTCATCTGCGAGGAATGCGGCGCTGGCTTTGCTACGGCTTTACGTTTAAAGTCGCATGTCCTAAACCATGAAAAGGGATCATTTAAATGCGAGATATGCGACAAAGTCCTCAGAACCGTGGCCTCATTGAAGGCACATGTTGAGAGGATCCACATGAAGGTCAGGAAGAACAAATGCCACCACTGCGACGAGACCTTTTTGGATTACTGTTCCAAGATAATGCACATGGTGAATGTGCACGGCGTCAAAGTGCCCGAGTACAGATGCAAGTTGTGCCCCAAAGTTTATTTGGTGAGCACGAAGTTGAATTGTCACATGAAGAAAAGTCACTTCCAAACAAAGAAGTACCAGTGTGATATATGCCAGAAGGAATTTTCTGCTCCCCATACGCTTAAAGAACACTCTGTCTGTCACACGGGTGATGGCCAGAAATCCTACGAAACCTTCAAATACAAAAAAGAAATCAGAAATAGAGCTCTGGCTCTTATAAGCAGCTCCGACTCTCTACCCTTCAGGATCCGGAAACACCATTTCTCCTGTTTTTACTGCGAGAAATTATTCAaggaatttttaaaattagagCAACATAACGCTACCGAACACAGTGTTACTGGCAGTGAAACTACAATGGACTTCTTGATGAGACTTCCCGCGGCCGAATCTGTCAATGTGAACTTCAGATGCTTTACGTGTAAGCTCTGCGCATACGCAGCAGCCGATTACAAAACATTGAGAGAACATCTCAATTCAAAACATGATATCAAATTCAACCAGACCAACGAATGGGTTATTCCATATCATATCAATTCAGAGGATTTTAAATGTGTGATCTGCCCAGAAAGTTTCGCCGGctataaattattaaatcaGCATATGAACACCCATTTTCGCAACTTTGTCTGCCACAATTGTGGCGTTGGGTTTACATCGGCATTGCGCTTGAGGCAACATGCGCCCACGCATGTGGAGGGAAAATATAAATGCGAATTGTGTGACAAAGTTGTCAACAAAATCGCGGCGTTAAGAGATCATGTTCAGAGAATCCACAAGAAGATAAAAAAGAACAAATGCCCCCACTGCGATGAAACGTTTAGGCACTACAATATGAAGATAACGCACATGGTTCACGTGCACGGCGCGAAAGTGCCCGAATATAAGTGCGATTTGTGTCCTAAAGTGTACCTGGTTAGTGGGCGATTGAAATGTCACATGAAAAGAGCTCATACTAATATTGCCAGCGTTACCACACACGAATGTAAAACATGTGAAAGAAAATTCACTACAAACCAGGCGCTTAAGGAGCACTTGGTCTGCCATTCTGAGGAGAAACAGTTTGAGTGTCAAGTGTGCCATAAGAAGTTTAGTCGCAAAAAAGTGCTGAAAACACATATGCGGATCCATAATAACGACAGGAGATTTGTCTGTGATGACAACACAACGACCATCCGTAAAGTAAACGATATAAACGCCAGTaacaaaacaaagaaattgatCGACTTCGAACTCAACCAACAGAAGAAAATAGGTAGGGAGGGAATCATGTCTCTCATAAGCAGCACCAACGCTTTGCCCTTTAAATGGTGGAACAACATTTTCTTGTGCTTTTACTGCGACAAGAAATACTCGGACTTTGCCGATTTAGAAACACACAACTCCGCTGAACACCAAGTTACAGAGATACAAATAATCAAAGCGCTCATCAAGCTTGGGAAATACCAGAAAGTTAAAGTGAATTATACCAATTTCGTATGCAAACTCTGCAATCATATTGCTGAAGACTTCAACAGTCTCAAAGAACATATTGGTTCAGAGCACAAAATGAAACTGAACGCAGATAACGATGGTGTTTTTCCTTTTCGGATGAATTCAGACGGGTTCAATTGCGCCATGTGCCCACAAAGTTTTCATAATTACCGACTGCTAAACCAGCATATAAACGTACATTTTCCGAACTTCGTCTGCGAGCAATGTGGTGTTGGCTTTGCAACGGACGAGCGGTTGAAGGCTCACACTCAAAGCCACGATACTGGGTCATATAAATGCGAGATGTGTGACAAAGTCTTCCGAAGAATTGCTGCGAAAAAGGATCACGTCATGAGGATCCACATGAAGGTGTACAAGCACAGGTGTCCTCACTGTAAAGAACTGTTCAAGGAGTATGCCCAGAGAATAAGACACATGGTTAGAGTGCACGGAGTCAAAGTCCCAGAGTTCCGGTGCTCGATGTGCCCTGATAAAGTCTATATGTTCAGTGGACAGTTGAGAGTTCACGAAAAAGTGCATCATTTAAAAACTAGAAAGTACGAGTGTAAAATATGCCAGAAGACTTGTTCCAATTCCGCTGTACTCAGAGATCACATGGTCTGTCACAGTGGCGAGAGAAATTTCGAATGCCAGGTGTGCAAAAAGAAGTATGGCCGCAAAAAAACTTTGGCTGAACACATGCGTGACGCAACCGCCACGGACGTATGTAATTCAGATGGGTCAGATGGTAATAtacaaccggtcattgtgggaGCTCCAAGCAACGCTGTGTTGTTGCGAGACATAGAACAGAAGAGAGTCAGTAGGGATAGCGCCATTACGCTCATCTCCTATACGAATGTCTGCCCTTTCAAATTCTTCAGGTGTTTCATTTGTCTCTACTGCCCCACACAATTCGTGAACATGCAAGAACTACGCCAACATCTCGATATACAACATCAGAACTTATCAGAGAACTTCATAAGAAAGGCACTGGTAAAGAAGGAAAAATGCCAGCCGattaaaattaatgtattaGACTATAGTTGCAAGCTATGTAATGATGAAATATCGAACTTTGAAGATCTCAAAAGCCATCTGATAGGGAAACATCAAAAACCAATCGACCTCAACAACGATGGGGTTCTGCCTTACAAAATCACGGAGAATGAGTATATCTGTGTGCTTTGCGAGACGAAATTCGAGCAGTTTGAGCTGCTGAATAGGCATATAAACAAGCATTACACGAAGTTTATTTGTGATCAGTGTGGAGCTGGATTTGCTTCTGAAGCGCGTTTGCGAAGACACGTGGAATCGCATAAAGTTGGAGCTTATCCATGCGAGGAGTGTGGCAAAGTGTTCGGTAAAATTACCACTAAACAGGTGCACATTCAGACGGTGCATTTGAACGCTAAGAAAAATAAGTGCATGTACTGTGAAGAGCTCTTTAAAAACTATTATCAAAAGCAACAGCACTTGCTAGATGCGCACGGGATCAAGATGAGAATTTTCAAATGTTCCCTTTGCCCCAAAATCTTCTCGAGAAGCGGTAGCCTTCGATGTCACGAGCGCTACAATCACATAAAAGCTCAAGTGTTCGCGTGCGAGCTGTGTGAATACCAGTCTCATGATAAAGGGACGTTAAGACGCCACATGATCTGTCATTCTGACGAGAAGAAGTACAAATGTGAGGTCTGTGAAAAGTCCTACGCTCGCCTAGGAACTTGGAAAGAACACATGAAGATACACTACAATATCAGGCGGTTCGCCTGCCAGTATTGTGGGAGAGCGTTCGTGCAAAAGTGCAGTAATACAACCTCAACGGGCGTACATAAAGTTGCTAAGGTCTCTGCCATCAAAGCCAAGGGTGTTGGAATTGTCAGGGACAACGACGCTAAGTTACGCGATATAGAACAGAATATAATCAGTAGGGAGAGCGCCATCGCCCTAATATACAATACCAACGTCTGTCCCTTTAAATTCAACAGATTTTTCATATGCCTTTACTGCCCTCGCCAGTTTATGAAACTGCCAGAATTGGGACAACACGTCGAACTTGAGCACAAAAACATAACTAAAGACTACATTTTTAAAGCAACCGCTAGGATAAGCAAACGTCAGCTATTAAAAATCAATATAATAGACTATGGCTGCAAGCTTTGCAACGATGAAATTTTCAATTTCGAAGACCTAAAGCACCACCTGCTTGGAAAACATAAACTACCGATCGACCTCACTAACGATGGAGTCTTGCCTTTTCGAGTTATGGACGATGAATTCATATGCATATTGTGCGGAAAGAAGCTGGAGATTTACAGGCATCTAAACAAACATATGGACGAGCACTACACCAGAGTCATCTGCGATATATGCGGAGCTGGATTCGCTTCTGACTCGCGCTTGAGAGCTCACGTTGCCTCGCACGAAAAGGGCTCATATCCCTGTGAGGAGTGCGGCAAACATTTCAGCAAAATGGTGTCTAAACAACTTCACATTGAAATGGTACACTTAAAGGTGAAGAGGAATAAATGCAAGTACTGCGACGAAACCTTCAGGGACTATTACCAGAAAGAGAAGCACGCGCTCGCTGTCCACGGCATCAAGATGAGAGAGTACAAGTGTGGTTTCTGCCCTAAAGTGTTTGTCAGAGGCTCTAACTTACGTTCCCACGAGCGTCTTTGCCATATCAGAGCAGAGACGTTCTCGTGCGAAGTCTGTGACTATAAAACCCATCATAAGAACACGCTGACCCGCCACATGGTCTGTCATTCGGACGAGAAGAAGTTCCAATGTCAAGTTTGTAAGAAATCGTACGCGCGAGCCAGGACTTTGAAAGAGCACATGAGAATACACAATAACGATCGGCGATACGCCTGCCAGTACTGTGGGAGAGCGTTCGTCCAGAAGTGTAGTTTGAAAGGGCATTTGAAGACGCACCATAAGGAACACCAGAATGGTGATAGTCAAATCGTcggctga
Protein Sequence
MQADRQRKFVPTETIAATLVSPRDTADRRRILFRKNISIIIESSTAYPFKYRKGTYMCYYCRNTFLEPEKLREHNKTQHSDVKITVKPKKYEPLKMDFTVTTCKLCGVDIPDYTNLKLHLKTEHNKTIDCTYGDSVLPYKLSRDEYCCQICGKRYEMFLSLHRHMNEHFGQYICENCGKNFVTQHRMANHARTHERGVFPCRLCKETFASYAAMCTHVAKVHRSNQRYKCPICDEKFASYKHRVKHLSTVHGEKITVFPCALCPKVFDLCSRRTAHIRFQHLQERNHVCHECGMKFFSNHELQEHSIKHNGERIYQCDVCDDDSTGFESNNSLKELRDEAQALISSANALPFKVHKSHFLCFFCDNLYPDFYKLEHHNLTEHQVTEKQLAYSIVRLAKTQDIKINFRNFECKLCTHVAENYEELKDHLRSFHDIKLNVSNDGIFPYHINSEGFICVFCDENFQHFKLLNQHINIHFRNFICEECGAGFATALRLKSHVLNHEKGSFKCEICDKVLRTVASLKAHVERIHMKVRKNKCHHCDETFLDYCSKIMHMVNVHGVKVPEYRCKLCPKVYLVSTKLNCHMKKSHFQTKKYQCDICQKEFSAPHTLKEHSVCHTGDGQKSYETFKYKKEIRNRALALISSSDSLPFRIRKHHFSCFYCEKLFKEFLKLEQHNATEHSVTGSETTMDFLMRLPAAESVNVNFRCFTCKLCAYAAADYKTLREHLNSKHDIKFNQTNEWVIPYHINSEDFKCVICPESFAGYKLLNQHMNTHFRNFVCHNCGVGFTSALRLRQHAPTHVEGKYKCELCDKVVNKIAALRDHVQRIHKKIKKNKCPHCDETFRHYNMKITHMVHVHGAKVPEYKCDLCPKVYLVSGRLKCHMKRAHTNIASVTTHECKTCERKFTTNQALKEHLVCHSEEKQFECQVCHKKFSRKKVLKTHMRIHNNDRRFVCDDNTTTIRKVNDINASNKTKKLIDFELNQQKKIGREGIMSLISSTNALPFKWWNNIFLCFYCDKKYSDFADLETHNSAEHQVTEIQIIKALIKLGKYQKVKVNYTNFVCKLCNHIAEDFNSLKEHIGSEHKMKLNADNDGVFPFRMNSDGFNCAMCPQSFHNYRLLNQHINVHFPNFVCEQCGVGFATDERLKAHTQSHDTGSYKCEMCDKVFRRIAAKKDHVMRIHMKVYKHRCPHCKELFKEYAQRIRHMVRVHGVKVPEFRCSMCPDKVYMFSGQLRVHEKVHHLKTRKYECKICQKTCSNSAVLRDHMVCHSGERNFECQVCKKKYGRKKTLAEHMRDATATDVCNSDGSDGNIQPVIVGAPSNAVLLRDIEQKRVSRDSAITLISYTNVCPFKFFRCFICLYCPTQFVNMQELRQHLDIQHQNLSENFIRKALVKKEKCQPIKINVLDYSCKLCNDEISNFEDLKSHLIGKHQKPIDLNNDGVLPYKITENEYICVLCETKFEQFELLNRHINKHYTKFICDQCGAGFASEARLRRHVESHKVGAYPCEECGKVFGKITTKQVHIQTVHLNAKKNKCMYCEELFKNYYQKQQHLLDAHGIKMRIFKCSLCPKIFSRSGSLRCHERYNHIKAQVFACELCEYQSHDKGTLRRHMICHSDEKKYKCEVCEKSYARLGTWKEHMKIHYNIRRFACQYCGRAFVQKCSNTTSTGVHKVAKVSAIKAKGVGIVRDNDAKLRDIEQNIISRESAIALIYNTNVCPFKFNRFFICLYCPRQFMKLPELGQHVELEHKNITKDYIFKATARISKRQLLKINIIDYGCKLCNDEIFNFEDLKHHLLGKHKLPIDLTNDGVLPFRVMDDEFICILCGKKLEIYRHLNKHMDEHYTRVICDICGAGFASDSRLRAHVASHEKGSYPCEECGKHFSKMVSKQLHIEMVHLKVKRNKCKYCDETFRDYYQKEKHALAVHGIKMREYKCGFCPKVFVRGSNLRSHERLCHIRAETFSCEVCDYKTHHKNTLTRHMVCHSDEKKFQCQVCKKSYARARTLKEHMRIHNNDRRYACQYCGRAFVQKCSLKGHLKTHHKEHQNGDSQIVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-