Onub016960.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979746.1:13561204-13562280[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.00018 22.1 0.1 1 37 9 45 9 53 0.87 2 2 2.2e-10 2.2e-07 31.4 0.3 2 45 128 171 127 171 0.94
Sequence Information
- Coding Sequence
- ATGTCACGGAAGCGAGGCGTGTGGTCCGAGGAGAGCCTTCACGCCGCCATGACAGCTGTCAAACAGGGGCTGTTGACAAGTCGTGCTGCATCACGCAGATATAAAATACCAAGGACTACACTGAGAGACCACTTGGTATCTGGAAGTGGTGTAAAACGCTTCGGTAGAAAATCAACATTAACTCAGGAACAAGAAAATGATCTTGTCTTAAGAATATTGCGTATCGCTGAAAGTGGACAAAAAATAACATCTAGTCTCATATGTAAAGAAGCGTTTGTGTTCTGCGAAAAGAATAATATTCAGCATAGATTTGACAAGAAAACTCGTGCTGCTGGCCATTCGATCGAAATGCCACGTAAGCGAGACTTTTTGCAATGGAGAGAAGAGAGCCTTCAAGCTGCCATAACAGCTGTCAAATATGGGCATATGGCAGCATTCGCTGCAGCTCGTAAATATAAAATACCAAGGACTACACTGTATAACCACTTGAAATCTGGAAGTGATGTAAAACGCATAGGACGCAAGTCAACCTTCACCCAGGAAGAAGAAAATgattttgtcataagtatattGCGTATCGGTCAAAGTGGAAAAAAAGTAACACCTAGTCTCATACGTAAAGAAGCGTTTATATTCTGCGAAAAGAATAATATTGAGCACAGCTTTAACAAGAAGAATCGCATTGCAGGCCGTGACTGGTACAAAGAGTTTAAAAAGCGTCATTCTGAAATTTCAGAAGCATTCCTTAACAAAAATTGA
- Protein Sequence
- MSRKRGVWSEESLHAAMTAVKQGLLTSRAASRRYKIPRTTLRDHLVSGSGVKRFGRKSTLTQEQENDLVLRILRIAESGQKITSSLICKEAFVFCEKNNIQHRFDKKTRAAGHSIEMPRKRDFLQWREESLQAAITAVKYGHMAAFAAARKYKIPRTTLYNHLKSGSDVKRIGRKSTFTQEEENDFVISILRIGQSGKKVTPSLIRKEAFIFCEKNNIEHSFNKKNRIAGRDWYKEFKKRHSEISEAFLNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125389;
- 90% Identity
- iTF_01125389;
- 80% Identity
- -