Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 6.4e-09 6.5e-06 26.7 0.1 1 44 9 52 9 53 0.86

2 3 1e-08 1e-05 26.0 0.2 2 45 128 171 127 171 0.92

3 3 5.1e-08 5.1e-05 23.8 0.3 3 41 220 258 218 261 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	6.4e-09	6.5e-06	26.7	0.1	1	44	9	52	9	53	0.86
2	3	1e-08	1e-05	26.0	0.2	2	45	128	171	127	171	0.92
3	3	5.1e-08	5.1e-05	23.8	0.3	3	41	220	258	218	261	0.88

Coding Sequence: ATGACACAAAAGCGAGGCGTCTGGTCTGAGGAAAACCTTCAAGCCGCCATGACAGCTGTCAAACGAGGGCTGTTGACAAGTCAAGCTGCATCACGCAAATATAAAATACCCTATACCACACTGAGAGACCACTTGGTATCTGGAAATGGTGTAAAACGCTTAGGCAGAAAATCAATATTCACTCAGGAACAAGAAAATGATCTTGTTACAAGAATATTGCGTATTGCTGAAAGTGGAAAAAACATAACATCTAGTCTCATATGTAAAGAAGCGTTTGGGTTCTGCGAACAGAATAATATTCAGCATAGATTTGACAAGAAAACTCGTGCTGCTGGCCATCCGATCGAAATACCACGAAAGCGAGACTTTTTGAAATGGACAGAAAAGAGCCTTCAAGCTGCCATAACAGCCgttaaatatgaaaatatggCAGTGAAGGCTGCAGCTCGTACATATAAAATACCAAGGTCTACACTGTGCAACCATTTGAAATCTGGAAGTGATGTAAAACGCATAGGACGCAAGTCAACCTTCACCCAGGAACAAGAAAATGATTTTGTCATAAGAATATTCCGTATCGCTAAAAGAGGAAAAAAATTAACACCTAGTCTCATACACTCACTAAAAATACCAGGAAAGCGAGGCTTGTGGTCTGAAAAGAGCCTTCAAGCCGCCATGACAGCTGTCAAATATGAGCATATGTCAGTATTGACTGCATCACGCAGATATAAAATACCAAGGACCACACTGAGAAACCACATGAAATCTGGAAGCAGTGTGAAATGCGTGGGTAAAAAATTAACATTCAACCAGGAACAAGAAAATGAACTTGTAATCAGAATACTCGGTTTAGCGCAAAGTGGAATAAATTTGACACCTGGTCTCATACGGAGAGAAGCATTTGTATTCTGCGAGAAGAATAATATTGAGCACAAGTTCAACAAGAAAGCTCGCGTTGCTGGTAAGAAATGGCTCCAGAAGTTTTTAAAGAGGCATGTTGAAATTTCTCAAGAGCTCTGTCAAAGGCGAAGGAATAAGCAATAG
Protein Sequence: MTQKRGVWSEENLQAAMTAVKRGLLTSQAASRKYKIPYTTLRDHLVSGNGVKRLGRKSIFTQEQENDLVTRILRIAESGKNITSSLICKEAFGFCEQNNIQHRFDKKTRAAGHPIEIPRKRDFLKWTEKSLQAAITAVKYENMAVKAAARTYKIPRSTLCNHLKSGSDVKRIGRKSTFTQEQENDFVIRIFRIAKRGKKLTPSLIHSLKIPGKRGLWSEKSLQAAMTAVKYEHMSVLTASRRYKIPRTTLRNHMKSGSSVKCVGKKLTFNQEQENELVIRILGLAQSGINLTPGLIRREAFVFCEKNNIEHKFNKKARVAGKKWLQKFLKRHVEISQELCQRRRNKQ

Sequence clustering based on sequence similarity using MMseqs2