Ofur001983.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_004193835.1
- Location
- NW:439406-488997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.4 3.7e+02 1.7 1.1 3 21 459 477 457 481 0.91 2 13 0.00049 0.024 14.8 0.3 2 22 503 523 502 526 0.89 3 13 0.054 2.7 8.4 4.4 1 23 540 563 540 563 0.95 4 13 0.14 7 7.1 1.6 1 22 568 589 568 592 0.86 5 13 9.7 4.8e+02 1.3 0.2 2 23 613 637 612 637 0.79 6 13 0.0039 0.19 12.0 0.1 3 21 644 662 643 663 0.95 7 13 0.00011 0.0052 16.9 1.4 1 23 722 743 722 743 0.97 8 13 4.5e-06 0.00022 21.3 1.2 1 23 749 772 749 772 0.97 9 13 0.00025 0.012 15.8 2.3 2 20 797 815 796 817 0.92 10 13 0.5 25 5.4 0.9 2 23 822 845 821 845 0.95 11 13 0.054 2.7 8.4 5.5 2 21 853 872 852 874 0.94 12 13 0.0084 0.41 11.0 2.1 1 21 880 900 880 905 0.91 13 13 0.13 6.3 7.2 0.2 1 22 911 932 911 934 0.91
Sequence Information
- Coding Sequence
- ATGCTGTCGCCGAGAGACGACGATGATGACGACAGCCACCTCTGCATCAAGTGCAACGCGACCATCGTCGGCCTCGACAACTACGTCAAGCACAGAAAAGAAAGATGCGGGAAAAACAACAAATCCTCcacttcaaaaccagaactccCGAGCATTGACAGTTTAGACCCGACCTACAGCCTCGGCGCTGATGTCTTCTTCCAATCGTTAGAACTGCAAAGTAGTGTCAAGAAGTCCTCACTATCAAGACTGACTCCACCTATATCTAAAGCAGTACTTGACACAAAAACAACTCTATCCGAAGCATCCACATCTAGGGATATCCCACGCATCAGTCCTTTGACCAACTTGAGAGAAGAGGACTGGATCGGAGAGCCTAGCTTGAGAATTAACAGCAACGAAGACAACCAAACAAAACTAATCAATGCGGTTGCTAGCATTAGCGGTAACGTCAAAAAAGTTGTGCCGACATCAACGTACAGTATATCAAATTATAATGACTACAAAGCAGACGTTGACTATGACGAATCTGATGACTCAGAGGAggatgatgaagaagaagttCATAATGTCAGTGAGAAATGGAAACCACCTCCAAACTATACCGGGGGAAAATGGCGACCGGATTCTCCTGATCATGAAGATTGGGATATGAGAGAGGAACAAGAACATACTGGGGGCAAATGGAAGCCCATAATGACTGATACTCATGACAGAGACGACGATTATGATGCACCACCCCCTGGGCACACAAAGGGCAAATGGGTGCCTGGACACGAGAAAACCCAAATTATGCAAACTACGATTCAAAATAAAGGATCGGTTCAATATTGGTGTGGACCTTGCAATAGACGTTTAGGCTCCCGGGCGATTTATGAAAAACATCTTATGTCCAGCTTGCACATGAGAAAAGTTCTTCCAGAACATGAATTAGAATTTTCTGGCCATCTAGAACCAATTCGTCCCGTCGACAAAAGGCTATTACGCCCTTCGCGATTTACTAACGATACTATTTATGCTGGAAcgcaaaagaaaaaaacaaagacATCTAAAGCTAAGCTGAGCgttaaaatagaaaagaaaaaaagaaagaggaAGCCGGCTTATGTACACTGCTCTGGTTGCAAGTCGCGTGTAAAATTACATCTAATGGGAAAGCATCTGATTTCACACTACCACTTCAGGAAAGCAAATAACATTAAAAGTGAGGCGTACCAGCAATTGATTCTAGACAACATAGACGCAATAGTCCATCAGGCGCCATTCCAATGCAGCCCATGTAAATTTTACACGAATTGGCTTTCAAATTTCATGCAACACTGGTATTCAGAAGAACACAAATCGACAACATCTTCTTTAGATGGTAGATACTGGTGTTCATTTTGTAAATTTGAGTGTATTACATCTCAGGAAATGTTGGAACACATGACAGGATCTGACCATAGCGAAGTAGTGGCAGTTATAAACAGGTCTATGCCAATTATCATAAGAAAAAGGGCGATATTAAAATGTGAAATTTGTGGCGAGGAATTTCGATATAATATAGAATTAAAGCAGCACAGTAATAAAACTGGTCACAAACTATCGCATACAGCTACTGACGGTTATCAAGAACTTCACAAATGCCAATTCTGTAAAGCTAAGTTTAAAACTTCCTTGAAACTAGCCGCACATTTGAAATTCAAGCACAAACAAAAGGAATTTCTCTGTTTAGTGTGTTCAAAGATGTTTACCAACTCATTAGAAGCGAAACATCACCGATACACGTTAGAGCATAGAATAAGAAagcatgaaataataaaagagaaAGGACTATCTACCAAAGATTTGACAAAGAAATGTCCATACTGCACTGACGTAAAGATATTAAAGAATGTTTTGGTACTGAAAGAACATATTCGTCTCGAGCACCCTGACATCAAAAAGAATTGTCCCAAGTGTGGAATGTCCTTCATCTTCCCACAAGAAGTGACCTGGCATCTTAGAAACAATGCTTGTCAGCTCCCGAGCACAAGTACTCTGAGTTCCTCGATTGTCTGGAACTGCAGCCAGTGCCTCTTCACCACCGACTCCCAAGCCGAGTGCTACTACCACGAGACATTGCACGGGGACGGGATCAAAGAGTTTCGGAATGTTTGCGGGAAGAACAAAGAAGTCCTAATGTACACCTGCCCTTTATGCCCTAAGGTCTTCAAAAAGCAGTCCCTCCGAACCCACCTGAAGCAGCACACATACGAAAGGCCGTATGTCTGCAATACTTGCGGAGCCTCCTTTTGTAGACAGTCCTCGCTGGCGAACCACAACAGGATGGTGCACATCAAAGGCGCAAGGAAGGCGAAGGTGAATAAGATCGTGATTCCGGTGCCACACTCGCTGAAGGACACTTGGAGCTGCTCGAAATGTTCAAAGACCTTCAGCAATCGGAGTGCACTGAGCCGGCACGAGTGTAATTTAGGCGAGCAGAGGTGTCCTCACGAAGGCTGCGAGATTGTCGCCGCCAACTCTTGCGTCCTGgccaaGCACAGAAGAACTCATGGGGAGAAGGTAAAATACCTTGAATGCAAGCTGTGTCCGTTCCAGACGGACCAGTCCAGCCATTTCAAGCGGCACATGAGGTGCCATGACGGCGAGAAGCCTTATTTATGCCCACACTGTGATTTCACCTGTGGGAGCTTGGAGAACCTTCGCAAGCACGCCCTCAGAAGCAGCATGCACTCAAACGTGTCCCTGTACCAGTGCAACGAGTGTGCCTTCCACACCAACATGGCCGCCGCGCTGCGAAAGCACCTCGTTGCTGAACACGCTGCCAAGTACAACACCAAAAATGTCACGCACGATGTCAAGATGTGGCTCATGAAGAAGGAATAA
- Protein Sequence
- MLSPRDDDDDDSHLCIKCNATIVGLDNYVKHRKERCGKNNKSSTSKPELPSIDSLDPTYSLGADVFFQSLELQSSVKKSSLSRLTPPISKAVLDTKTTLSEASTSRDIPRISPLTNLREEDWIGEPSLRINSNEDNQTKLINAVASISGNVKKVVPTSTYSISNYNDYKADVDYDESDDSEEDDEEEVHNVSEKWKPPPNYTGGKWRPDSPDHEDWDMREEQEHTGGKWKPIMTDTHDRDDDYDAPPPGHTKGKWVPGHEKTQIMQTTIQNKGSVQYWCGPCNRRLGSRAIYEKHLMSSLHMRKVLPEHELEFSGHLEPIRPVDKRLLRPSRFTNDTIYAGTQKKKTKTSKAKLSVKIEKKKRKRKPAYVHCSGCKSRVKLHLMGKHLISHYHFRKANNIKSEAYQQLILDNIDAIVHQAPFQCSPCKFYTNWLSNFMQHWYSEEHKSTTSSLDGRYWCSFCKFECITSQEMLEHMTGSDHSEVVAVINRSMPIIIRKRAILKCEICGEEFRYNIELKQHSNKTGHKLSHTATDGYQELHKCQFCKAKFKTSLKLAAHLKFKHKQKEFLCLVCSKMFTNSLEAKHHRYTLEHRIRKHEIIKEKGLSTKDLTKKCPYCTDVKILKNVLVLKEHIRLEHPDIKKNCPKCGMSFIFPQEVTWHLRNNACQLPSTSTLSSSIVWNCSQCLFTTDSQAECYYHETLHGDGIKEFRNVCGKNKEVLMYTCPLCPKVFKKQSLRTHLKQHTYERPYVCNTCGASFCRQSSLANHNRMVHIKGARKAKVNKIVIPVPHSLKDTWSCSKCSKTFSNRSALSRHECNLGEQRCPHEGCEIVAANSCVLAKHRRTHGEKVKYLECKLCPFQTDQSSHFKRHMRCHDGEKPYLCPHCDFTCGSLENLRKHALRSSMHSNVSLYQCNECAFHTNMAAALRKHLVAEHAAKYNTKNVTHDVKMWLMKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076021;
- 90% Identity
- iTF_01125900;
- 80% Identity
- -