Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:1180101-1213680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 0.065 13.5 1.4 1 23 366 388 366 388 0.98

2 9 0.57 28 5.2 5.1 1 23 395 417 395 417 0.98

3 9 0.00011 0.0057 16.8 5.0 2 23 449 470 448 470 0.98

4 9 0.0005 0.025 14.8 1.7 1 23 474 497 474 497 0.96

5 9 0.017 0.84 10.0 0.7 2 20 513 531 512 533 0.94

6 9 0.19 9.3 6.7 5.4 3 23 598 619 596 619 0.94

7 9 0.36 18 5.8 0.1 3 23 633 652 631 652 0.92

8 9 9.6e-07 4.7e-05 23.4 1.5 1 23 658 680 658 680 0.98

9 9 4e-05 0.002 18.3 1.6 1 23 686 709 686 709 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	0.065	13.5	1.4	1	23	366	388	366	388	0.98
2	9	0.57	28	5.2	5.1	1	23	395	417	395	417	0.98
3	9	0.00011	0.0057	16.8	5.0	2	23	449	470	448	470	0.98
4	9	0.0005	0.025	14.8	1.7	1	23	474	497	474	497	0.96
5	9	0.017	0.84	10.0	0.7	2	20	513	531	512	533	0.94
6	9	0.19	9.3	6.7	5.4	3	23	598	619	596	619	0.94
7	9	0.36	18	5.8	0.1	3	23	633	652	631	652	0.92
8	9	9.6e-07	4.7e-05	23.4	1.5	1	23	658	680	658	680	0.98
9	9	4e-05	0.002	18.3	1.6	1	23	686	709	686	709	0.97

Sequence Information

Coding Sequence: atgtctaCGCTTAAGATATGTAGGATATGCCTGCGGACCGGTGCCAAGATGTACAAGTTCGATCGATTCCAGttgctatatttttatgaaCAAGTTATGTCTCTCAAAGTGAATGAAAAAGATGGGCTACCACAATACTTCTGCTATGAATGTGCATCACTGCTTCAGAAGTTTCATGAGTTTAAAGAAAAGTGCTTCAGGGGGCTGATCGCTTTGAAGAAAATGCTGTGGAAAGGCCAGATTACATACAAAGCAGTAGACAATGTAGACAGATTGTCTATCAAACTACTGTCTCCTTACGATGTTCTTACTGTCTCAAAACGAGTGAAAACCGTTTCAACCATAGAGAAGCAAGAAATAGATGAGATTAAGGATGAAGACGATGACATATCACAAAAAGAAGACAACACAGTCTCTGATAGCGACAGAAGTTATAGAGACGAGATAGTAGAAGTTAAGAAGCGTAAAGTGAAGCGGAAAAAAAGCTTAACACCGGACTTTGAAAACGATGAAGAACATATAAAAGATCATAAAGAAGAGAGTAAAAGTACTTTCTTTGATGGTGATAGtgacaaagaagaagaaaaagttaaAAGCCATAAAACTAAATCGAAAAGCCGAAAAAGTTTAATAGACAAAGATAGAGAAAAGCCATTAAGAGATAGGGAAGCTAAACGTAAGAAGAAATCGTTTTACGAAAGCGATTTGGAGGAAGATTTTACAACGGAATGTAAAGTTAAGAGCCGAGAGAGTTCTGTGTCAGACTTTGGTGATATCACACTGATAGATAACGAACCTGCAATATACGTTGAAGAGAAGCCGATGCATAGTGACACAGAGCTGGATATAACGTTCGAAGATGGCAGCAAACCGAGCAGCTCAACTACAATATTTGTGGATGAGAAGAAAGAAATTCCGCCTAAGAAAGAGTCAAAGGAAAAAGTTAAAGGTACAAAAGGTCCAAAGAAGACCAAATGGAATGCTAAGAATAAGGTGTTGGAATCAGGTAATTGGAAGAAGTATAGTTTGACGGAGCAAGAGGCTTTAGAGCAGTTCCGAGCAAAGGCAGTTGATCCGAAATATATTGCAGCTCCGTTCAAATGTGCGGACTGTTTCAAGGGTTTCTCGAAGGAGGAGATATTGAAGAGGCACAGGCGTTTGCATGATGCGGCGATCGGCAACTTCGAGTGTCGCTTCTGCCGCATGCGGTTCAAGATCGACTGTCGCTTGCGCAAGCATATGCGCGCTCATTATACCAAGTACGAGTGTCTGCGGTGCAACCTCATCTGCCCTATCGAACTAACGGCATTGCTTCACGAAGAACTGCACAACGGTGTCGTGAAGAAATGTGAACAGTGCAACGAAGAGTTCAGGCATAGGTCAACATACTACACGCATATGCGCACACATCGTAGCGAGCACGTGTGCACGCTATGCGGCGCGTCGTTCGTCAGCCCGGCCGGCCTGCACCAgcacaagaagaagaagcactTCGACAGCGAGCCTGAAGGCGGCGGCGAAGACGAAAAGCAGACGTACTGCAAAAAGTGCGATATTCGCTTCGAAACGCGCGCGGCTTACACCGAACATCTGTTCCACTCCGCTATGCACACTGAGGGGATGGAgGATGAAATACGCGACGAGTCGTGTGCTCTAAGAAAAGTCATCGGAAAAATGTCGAAAGCCAAGATAGCGAATGAACTACGAAAAAGACAATCTGAAGACCAACCACTACCTCGAATCAAACTCAATACAAGGAAAGGGAGAAGAATTTTCAAGAAGCCTACGGACTGTTATCAGTGCGGCAAACACTTCGAGACGCAGGACGCGTGCCTGCGGCACCACCGCGAGGAGCACCCGCGAACGTCCTTCTACCCGCCCTCCGACCGACAGATCTGCGAGATTTGTGGCGCCTCGCTCTCGCGAAGCACAGTGGCGATGCACCTTAACATGCACACTCGCGAGACGCTATACTCGTGCGACGTGTGCGGGCGCACTTTCCATTCTAAGGGCGGACTGAAGAGGCACATGGTGACGCACACGGGTGAGAAGCGCTACGCCTGCCGACTGTGCGAGAAACGCTTCACGCAGAGCGGTAGCCTCAGTCTGCACTACCGCACCTTCCATCTGAAGCAGCCCTACCCTCCGAGGAACAGAAGAAAAGAAATCGAGAAGCCGAGCGCAGACGCAGCGAACTTCCTAGGTTTTTACGGCAAAGAAGAATATTAA
Protein Sequence: MSTLKICRICLRTGAKMYKFDRFQLLYFYEQVMSLKVNEKDGLPQYFCYECASLLQKFHEFKEKCFRGLIALKKMLWKGQITYKAVDNVDRLSIKLLSPYDVLTVSKRVKTVSTIEKQEIDEIKDEDDDISQKEDNTVSDSDRSYRDEIVEVKKRKVKRKKSLTPDFENDEEHIKDHKEESKSTFFDGDSDKEEEKVKSHKTKSKSRKSLIDKDREKPLRDREAKRKKKSFYESDLEEDFTTECKVKSRESSVSDFGDITLIDNEPAIYVEEKPMHSDTELDITFEDGSKPSSSTTIFVDEKKEIPPKKESKEKVKGTKGPKKTKWNAKNKVLESGNWKKYSLTEQEALEQFRAKAVDPKYIAAPFKCADCFKGFSKEEILKRHRRLHDAAIGNFECRFCRMRFKIDCRLRKHMRAHYTKYECLRCNLICPIELTALLHEELHNGVVKKCEQCNEEFRHRSTYYTHMRTHRSEHVCTLCGASFVSPAGLHQHKKKKHFDSEPEGGGEDEKQTYCKKCDIRFETRAAYTEHLFHSAMHTEGMEDEIRDESCALRKVIGKMSKAKIANELRKRQSEDQPLPRIKLNTRKGRRIFKKPTDCYQCGKHFETQDACLRHHREEHPRTSFYPPSDRQICEICGASLSRSTVAMHLNMHTRETLYSCDVCGRTFHSKGGLKRHMVTHTGEKRYACRLCEKRFTQSGSLSLHYRTFHLKQPYPPRNRRKEIEKPSADAANFLGFYGKEEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01281725;
90% Identity: iTF_01125876;
80% Identity: -