Ofur000961.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:53515-80181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.097 4.8 7.6 0.0 3 23 141 161 139 161 0.96 2 11 0.0017 0.082 13.2 2.8 1 23 264 286 264 286 0.99 3 11 2.6e-05 0.0013 18.9 0.4 1 23 292 315 292 315 0.97 4 11 0.0033 0.16 12.2 3.4 1 23 320 343 320 343 0.94 5 11 0.00011 0.0052 16.9 0.6 2 23 497 518 496 518 0.97 6 11 7e-05 0.0034 17.5 2.4 1 23 524 546 524 546 0.98 7 11 5.4 2.7e+02 2.1 0.1 2 23 636 657 635 657 0.95 8 11 0.0078 0.39 11.1 3.1 1 23 663 685 663 685 0.95 9 11 0.0002 0.0098 16.1 1.3 1 23 691 713 691 713 0.97 10 11 0.0005 0.025 14.8 2.1 1 23 722 744 722 744 0.98 11 11 0.00029 0.014 15.6 0.4 2 23 791 812 791 812 0.96
Sequence Information
- Coding Sequence
- ATGAATCAAAACATGGTTGAAATGGATCCGCTCAGTTCATACGAATACCCAGGCTACGATACGTACAACCCTGCTCCAATTATTACCCCAAATTTAATTCCCCCTAACATTATCCCCCCTAATATTATCCCACCCTACAACTATGACGTCAAAATGGAACCTCCACCGATGACAAACCATGAATTCTTCAACAACTTCCTTCAAAATGTCACCGAAAGCAACGTAAACCAAGAGAAAGTACATACAAACCTCAACGAAGAACCAAATAGAAATAACTTTAGTAATAACGTAGCACAAAATAATACAGATAATGACGTAAAACCTGATATTAAGAAAACGATTAAAAAGGAAAAATTAAAAGGGAAACGCAGCAGTTATTGGTCTGAGAAAATTACAGATGACAATTTCCAGTTTTACGGTTGTGCTATATGCAATATAAGTTACCCATCGTTAGGTGAGCTAGACCAACACGTTACTATACACAAAGATAGATTAACTAGCTacgatttaaaaattaagaacttaatgaagagaaaaaagttaaaaaaagaacaaaaaaagctaAAGAAACTCAAaggaaaggtaaaaaaggaagACAAAGATTTTGAAATACCGGAAATTAAGCCAGAAGAAGGATATATAGGTAACGAAAAGGCAACGGAGTATAACGGGGATAGTTCAAATCAGAACAACGAAAACCAACCATCAAATAGTACGGATGATAAAAAAGATGTGAAATTGACGACTAACGAAGATTCAAATGCAACGGACAAGAATTTGGAGAAGATATACAAATGTTTCGCGTGTCAAAAACAGTTCACGCTTAGTTATTATTTGAAACTTCACGTGAGATCACATACAGATGAAAAACCATACACCTGCTCAGTTTGCGGACAGTCGTTTATAACCGCAAGCAAACTTGGGAGGCACAACAAGAGAATTCATCTGTCTGTCAGATACCAATGCAGGATATGTTATAGGTTCTTCAATAGATTTGAAAATTTGACCGTGCACTTCGATAAGAAACACCCGGATGACAAATTGGAAGGAGAACCGTatgACTTCAACGCAATCCTACCATATCTGAAAGAGCTAGAAGAACAACTGAGAGAGAAGGCAGAGGCAGAAGCCGAAGCGAAACCCAAGTCCGAGGACATGTGGGGAGACGTGTTTGAACACAACCAGACAACGGATAGTGGTCCCAGCGTACTGCCTAAGGACGAAGACACCAAACACTTCGACCCTCCCCCTCCCATCGACGTCCAGATCGAAGAAGTCAAAGTGGACCCTCCAGACGTCGACATCGACGTCGACATCAAGCGCGAGTGTGACGACGACGCGCCGGCCGACGACGACAGCGTCAAGGACGAGAGATATTCCGACGACGATTACTTCCCATCCAACACATGGGCAGCCTCTCCCAAGATAGAGGAAGTTCCTCCCCCCTCCCCGACCCGCCACAAAAGGACAAAAGGCGACGGCCCCCTCAAATGTGACGTGTGTTCTAAGAGCATTAGCACAGTGTCCTATATGAGGGTGCATATGCGGACCCATACTGGAGAAAGGCCTTTTAAGTGTTATGTGTGTGGGAGGGGCTTTATCACGTCGAGCAAGATGCATAGACACGTGCTGACTCATCAGGAGACTTGGGAGGGTGACGAAGCTCCAGTGAAATTAGAAGATGTAAAGCCAGACATGGAAGAAACGGGTAAAGATGGGAAATTGGATAAAAAaagtCTAATAAAGAAGGCCAAAGCGAAATTCAACAAGAAGCAAGGTCCGGGCGAAAAGCAGAAGAAGTATAAGAAACGGCCGCACGCGTGCGAGTTCTGTCATAAACGGTTCCTGCATTTGGAGACTTTGCAGGTCCACAAAAAATGCCACGACGGTGAGGATCTAGTAATGAAATGCAACTTCTGCCTGGAGACGATGCCTGATGAACCGACGCTCCGGGAGCACGAAGCCACACACAGCGGACCGAGGCCCTACCTATGCACGATATGCGGCAAGGGATACAAGAAGAAAGAGACCATGGTGTACCACCGCAAGCACCATAAGCCAGACAAGGATTACATCTGCAACGTGTGCTCCAAGTCCTTCAACGCGCCGTGCAAGTTGCAACGACATATCGTCAGCCATAGAGCTGACAAATTCGTGCTTAGGTACGAATGTCCAGTTTGCGCTCACATGTTCAACACGAAATACCACGTCCAAATGCATCTGGCGACGCACCAGAAAGAGGGGCTcATAATGGAAGAAAACCGCAACGAAATCCTAGCAATGGTGCTCCAAAACGCTCGAAAAATACCCAAGCAAACAGACGGTAGTGCAAATCTAACGGATCTGATACCTTCAGACGAGCGATCGCGCGTTTGCAACATTTGTGGCGAAGTTTTTCAACATTTCTATTATTTAGAAGAACATCTGAAAGGCCACGGCTCTAGAATAGCTTTAGAAGATATAACCAAACCTGAAGAGAAAAAACATGTCTGCCAAGTCCACCGAGACGAATCAACTGTGCGATGCCGAGCCAAGAATTCCTCCTGCTGTATGGACGGCTGCCCGAAGCCTAAGAAGAAAAAGGGCTCCAAATGCAAGACCAAAAAGAACCCATCGCTGGACACCATCAAGAAATCCTTGAGCGTTAACTGCTGTGCATGTTGTTGTGTGTTAGCAGACTACATAAAAGAAGCCTGCAAGCTTATATGCTCTTGTTTGAACGAAAAACCGACAGAGACCAGAATCTGCGAGTTGTTCTCCCAATTGTTGGAACTATCCTGGTGTCTAGGTTCCGATTGTTGTCACTTGATCAAGCATTTGTTCAGATTTTTGTGCGTTTACAAGAAGTGA
- Protein Sequence
- MNQNMVEMDPLSSYEYPGYDTYNPAPIITPNLIPPNIIPPNIIPPYNYDVKMEPPPMTNHEFFNNFLQNVTESNVNQEKVHTNLNEEPNRNNFSNNVAQNNTDNDVKPDIKKTIKKEKLKGKRSSYWSEKITDDNFQFYGCAICNISYPSLGELDQHVTIHKDRLTSYDLKIKNLMKRKKLKKEQKKLKKLKGKVKKEDKDFEIPEIKPEEGYIGNEKATEYNGDSSNQNNENQPSNSTDDKKDVKLTTNEDSNATDKNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRIHLSVRYQCRICYRFFNRFENLTVHFDKKHPDDKLEGEPYDFNAILPYLKELEEQLREKAEAEAEAKPKSEDMWGDVFEHNQTTDSGPSVLPKDEDTKHFDPPPPIDVQIEEVKVDPPDVDIDVDIKRECDDDAPADDDSVKDERYSDDDYFPSNTWAASPKIEEVPPPSPTRHKRTKGDGPLKCDVCSKSISTVSYMRVHMRTHTGERPFKCYVCGRGFITSSKMHRHVLTHQETWEGDEAPVKLEDVKPDMEETGKDGKLDKKSLIKKAKAKFNKKQGPGEKQKKYKKRPHACEFCHKRFLHLETLQVHKKCHDGEDLVMKCNFCLETMPDEPTLREHEATHSGPRPYLCTICGKGYKKKETMVYHRKHHKPDKDYICNVCSKSFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLIMEENRNEILAMVLQNARKIPKQTDGSANLTDLIPSDERSRVCNICGEVFQHFYYLEEHLKGHGSRIALEDITKPEEKKHVCQVHRDESTVRCRAKNSSCCMDGCPKPKKKKGSKCKTKKNPSLDTIKKSLSVNCCACCCVLADYIKEACKLICSCLNEKPTETRICELFSQLLELSWCLGSDCCHLIKHLFRFLCVYKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125698;
- 90% Identity
- iTF_01125698;
- 80% Identity
- -