Ofur005392.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:164329-176536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 5.6 7.4 0.9 3 20 323 340 322 342 0.93 2 10 1.3e-06 6.6e-05 22.9 1.0 1 23 349 371 349 371 0.98 3 10 0.0043 0.21 11.9 0.7 1 23 402 425 402 425 0.96 4 10 0.00094 0.046 13.9 4.5 1 23 428 451 428 451 0.98 5 10 4.6 2.3e+02 2.3 1.9 1 23 454 477 454 477 0.81 6 10 0.027 1.3 9.4 0.3 3 21 490 508 489 513 0.92 7 10 0.00031 0.015 15.5 0.1 2 23 522 544 521 544 0.94 8 10 3.1e-07 1.5e-05 24.9 0.6 1 23 550 573 550 573 0.98 9 10 0.00055 0.027 14.7 1.0 3 23 584 604 583 604 0.97 10 10 0.0002 0.0098 16.1 0.1 1 23 610 633 610 633 0.97
Sequence Information
- Coding Sequence
- ATGTCAAGTGCGGCGGCAAAAAAGCGCTTCAGAGCTCTGAGAGAGCTGGGAGTGGAGCCGATTTTGGCTTCAACACTGGCAGTTAAGAGCTTCGCTGAGCTGAAGCAGATGGGGTACAAGTTCTTCTCGCAACCTGAATCTGGGCGCAAACCGGTAAAACGGGTTCGCTCGGAGGAGGAATCGCCAAAGGGACATATTACCAAAGTCCCAAAGcataaaaaagtttataaaataatgttaaaaacagAAATTAAAAGTGAATACGATACTGCTATGCAGCCCCAGTGCCGTGCGTGTCTTAGTTTAAGTAGAAAATTAATTCCAATAGGAGAATACAGTCGTATTTACTGCAAATTACTATTAGAAAATCAATATGAGTCTATTCTGCCCTCTGAAGACATACAGCTATGTTGGGAATGCATCGGCCAACTGAGGAAACTTACACAATTCCAACGTCAGGTCCGAAAGGCAAACAATATGATTCAAACGTGCCAGAATTTCATGTTCGGCACCCTTTCAAATCTAACAACAGTCATCATGAACGATACATACCCTAATATCATCTATGTAAACAATACTAACATAGAAAATGATGTAGAtaatgaaaatatcaatcataAAGACGAATGTGATAGtgttaataatgataatgatgcaTTTAATGACGATAATGAttcattttttaaagataatgaTAGTAAAGTTGACATCAAAGTTGATAATACAGTTTTAAATGATACTGTGAACGAGAAAAAAGAAGTAAATATTGATAATCAGAAcgaaattaaaagaaaagtgAAATACAGAAATAAGTGGGCAGAGAAGAGAGCTCGCCTAAATAAGAAACCTAAATTCAAAGTTCTTACTTACaaagaactgacggtcgataaGTATTTTAGAAGAGAACAGATAGATGTAGAGACTTCCATGAAAGAAAGAGACGGTGATGGTTTTGTAAAGGGTATGTGTGGAAAATGTGGAATAACATTGAAAGATGAGGGTATGCTGTTGAAACATACATGCCATAAAAAGACTACAGGAACATACATCTGCGACGTATGCAATAGACGATTATCACAAAAATCCCAACTCCTACGTCATATAAGAAGACATTTCGTCAAATACTACTGTAAGCTTTGCAAGTTCAGGTGTAAGATTAAGGAAGAAGGAATGAAACATTTGGTCAACGATCATAGAAAAGTGTTTCAATGCTTGAAGTGCGAGTTAGCGTTTGCgAGCAGACAAGAGTTCTCCCAGCACTACAAGGAGTGGCACGAGAAGTTTGTGTGCGACCACTGTGGAGTCAGCTTCAAGATGAGGTACTGCATCAAGGATCACAtcagGAAACAGCATTCGCCATTCGAGTGCGCGCCCTGCAATAAGAAATTCGCTCGCTACAACGGACTGTGGTTCCACAATAAGGTGTGCCATCCTCCGCCCAGCGACGGCCCACCACTGGGCGCGTACTGCGTGGAATGCGACAAGCGGTTCCCAGACGTGTACAGGTACAAGTGGCACCTACAGAACAGCGTCAAACACACGCCCAAGAAGAAAATACGagTGCCATGCCCAGATTGCAGCAAGGTATTCTCAAAGAACATATACATGAAGGATCACTACAATCTTGTTCATCTGAAGAACTTTAAGTACAGATGCGAAGAATGTGACAAGAATTTCGTCCGTAACGCTGACCTGGTGAAACATCGGCGGAAGATACACGAGGGTATTCTGCCACCGAAGAATAAGATATGCTACGTTTGTGGGAGAGGATTTACGACCAACGAGATACTAAGCCACCACCTCCGAACTCACTCGGGCGAGCGGCCGCATCAGTGCACAGCCTGTCCTGCGGCCTTTGCACAGCGCGCCGCTCTGCGCGCTCACAAGCGTACGCCGCATCCTTCCACGCGCAAGTGA
- Protein Sequence
- MSSAAAKKRFRALRELGVEPILASTLAVKSFAELKQMGYKFFSQPESGRKPVKRVRSEEESPKGHITKVPKHKKVYKIMLKTEIKSEYDTAMQPQCRACLSLSRKLIPIGEYSRIYCKLLLENQYESILPSEDIQLCWECIGQLRKLTQFQRQVRKANNMIQTCQNFMFGTLSNLTTVIMNDTYPNIIYVNNTNIENDVDNENINHKDECDSVNNDNDAFNDDNDSFFKDNDSKVDIKVDNTVLNDTVNEKKEVNIDNQNEIKRKVKYRNKWAEKRARLNKKPKFKVLTYKELTVDKYFRREQIDVETSMKERDGDGFVKGMCGKCGITLKDEGMLLKHTCHKKTTGTYICDVCNRRLSQKSQLLRHIRRHFVKYYCKLCKFRCKIKEEGMKHLVNDHRKVFQCLKCELAFASRQEFSQHYKEWHEKFVCDHCGVSFKMRYCIKDHIRKQHSPFECAPCNKKFARYNGLWFHNKVCHPPPSDGPPLGAYCVECDKRFPDVYRYKWHLQNSVKHTPKKKIRVPCPDCSKVFSKNIYMKDHYNLVHLKNFKYRCEECDKNFVRNADLVKHRRKIHEGILPPKNKICYVCGRGFTTNEILSHHLRTHSGERPHQCTACPAAFAQRAALRAHKRTPHPSTRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125798;
- 90% Identity
- iTF_01125798;
- 80% Identity
- -